Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC8.73□□□□□ -1.01
HSPG2P98160 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC8.73□□□□□ -1.01
HSPG2P98160 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC8.73□□□□□ -1.01
HSPG2P98160 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC8.73□□□□□ -1.01
HSPG2P98160 AC012513.2-201ENST00000441511 1137 ntBASIC8.73□□□□□ -1.01
HSPG2P98160 AC103724.2-201ENST00000520355 476 ntBASIC8.73□□□□□ -1.01
HSPG2P98160 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC8.73□□□□□ -1.01
HSPG2P98160 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC8.73□□□□□ -1.01
HSPG2P98160 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 MARS-233ENST00000628866 2583 ntTSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 U3.5-201ENST00000363448 216 ntBASIC8.72□□□□□ -1.01
HSPG2P98160 SSR4-202ENST00000370085 526 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 RBP4-203ENST00000371469 814 ntTSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 OR2A1-AS1-203ENST00000468575 568 ntBASIC8.72□□□□□ -1.01
HSPG2P98160 RN7SL794P-201ENST00000469816 280 ntBASIC8.72□□□□□ -1.01
HSPG2P98160 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC8.72□□□□□ -1.01
HSPG2P98160 AC032044.1-201ENST00000570924 570 ntTSL 4 BASIC8.72□□□□□ -1.01
HSPG2P98160 CLDN6-203ENST00000572154 461 ntTSL 3 BASIC8.72□□□□□ -1.01
HSPG2P98160 FAM187B2P-201ENST00000577135 713 ntBASIC8.72□□□□□ -1.01
HSPG2P98160 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 RNA5SP491-201ENST00000362936 118 ntBASIC8.72□□□□□ -1.01
HSPG2P98160 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 CCL19-202ENST00000378800 414 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 AC092810.2-201ENST00000431570 362 ntBASIC8.72□□□□□ -1.01
HSPG2P98160 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC8.72□□□□□ -1.01
HSPG2P98160 AC006001.2-202ENST00000439360 508 ntTSL 3 BASIC8.72□□□□□ -1.01
HSPG2P98160 CAP2-207ENST00000493172 861 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC8.72□□□□□ -1.01
HSPG2P98160 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC8.72□□□□□ -1.01
HSPG2P98160 AC009812.1-201ENST00000605948 1059 ntBASIC8.72□□□□□ -1.01
HSPG2P98160 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 ASLP1-201ENST00000428790 637 ntBASIC8.72□□□□□ -1.01
HSPG2P98160 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC8.72□□□□□ -1.01
HSPG2P98160 MIR5193-201ENST00000584510 109 ntBASIC8.72□□□□□ -1.01
HSPG2P98160 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC8.72□□□□□ -1.01
HSPG2P98160 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HSPG2P98160 AC069061.4-201ENST00000581294 1347 ntBASIC8.72□□□□□ -1.01
HSPG2P98160 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC8.71□□□□□ -1.01
HSPG2P98160 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC8.71□□□□□ -1.01
HSPG2P98160 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 RHOC-205ENST00000369636 786 ntTSL 2 BASIC8.71□□□□□ -1.01
HSPG2P98160 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC8.71□□□□□ -1.01
HSPG2P98160 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC8.71□□□□□ -1.01
HSPG2P98160 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.01
HSPG2P98160 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC8.71□□□□□ -1.01
HSPG2P98160 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC8.71□□□□□ -1.01
HSPG2P98160 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 AC087481.3-201ENST00000602886 1894 ntBASIC8.71□□□□□ -1.01
HSPG2P98160 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC8.71□□□□□ -1.01
HSPG2P98160 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 AC015813.5-201ENST00000624641 1514 ntBASIC8.71□□□□□ -1.01
HSPG2P98160 AC064801.2-201ENST00000625052 1303 ntBASIC8.71□□□□□ -1.01
HSPG2P98160 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms