Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 AC018665.1-201ENST00000622927 1362 ntBASIC13.95□□□□□ -0.18
RFX3P48380 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
RFX3P48380 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.95□□□□□ -0.18
RFX3P48380 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RFX3P48380 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
RFX3P48380 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.94□□□□□ -0.18
RFX3P48380 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.94□□□□□ -0.18
RFX3P48380 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
RFX3P48380 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
RFX3P48380 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.94□□□□□ -0.18
RFX3P48380 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.94□□□□□ -0.18
RFX3P48380 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.94□□□□□ -0.18
RFX3P48380 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.94□□□□□ -0.18
RFX3P48380 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.94□□□□□ -0.18
RFX3P48380 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC13.94□□□□□ -0.18
RFX3P48380 FOS-202ENST00000535987 1402 ntTSL 2 BASIC13.94□□□□□ -0.18
RFX3P48380 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC13.94□□□□□ -0.18
RFX3P48380 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
RFX3P48380 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
RFX3P48380 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.94□□□□□ -0.18
RFX3P48380 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
RFX3P48380 RPSAP52-203ENST00000622976 1023 ntBASIC13.94□□□□□ -0.18
RFX3P48380 CU639417.3-201ENST00000624240 1404 ntBASIC13.94□□□□□ -0.18
RFX3P48380 AC140479.7-201ENST00000636301 2332 ntBASIC13.94□□□□□ -0.18
RFX3P48380 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 AC097359.2-201ENST00000604992 2389 ntBASIC13.94□□□□□ -0.18
RFX3P48380 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
RFX3P48380 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.94□□□□□ -0.18
RFX3P48380 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RFX3P48380 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.93□□□□□ -0.18
RFX3P48380 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
RFX3P48380 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
RFX3P48380 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.93□□□□□ -0.18
RFX3P48380 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.93□□□□□ -0.18
RFX3P48380 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
RFX3P48380 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.93□□□□□ -0.18
RFX3P48380 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.93□□□□□ -0.18
RFX3P48380 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
RFX3P48380 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.93□□□□□ -0.18
RFX3P48380 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
RFX3P48380 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC13.93□□□□□ -0.18
RFX3P48380 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.93□□□□□ -0.18
RFX3P48380 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
RFX3P48380 AC008735.3-201ENST00000596646 500 ntBASIC13.93□□□□□ -0.18
RFX3P48380 LINC02084-201ENST00000606069 1096 ntBASIC13.93□□□□□ -0.18
RFX3P48380 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.93□□□□□ -0.18
RFX3P48380 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.93□□□□□ -0.18
RFX3P48380 IGHV3-72-202ENST00000621503 303 ntBASIC13.93□□□□□ -0.18
RFX3P48380 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.93□□□□□ -0.18
RFX3P48380 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.93□□□□□ -0.18
RFX3P48380 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.93□□□□□ -0.18
RFX3P48380 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.93□□□□□ -0.18
RFX3P48380 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms