Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SCN4AP35499 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.8■□□□□ 0.28
SCN4AP35499 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCN4AP35499 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SCN4AP35499 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SCN4AP35499 RNU1-80P-201ENST00000459500 161 ntBASIC16.8■□□□□ 0.28
SCN4AP35499 B9D1-206ENST00000461069 923 ntTSL 2 BASIC16.8■□□□□ 0.28
SCN4AP35499 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC16.8■□□□□ 0.28
SCN4AP35499 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC16.8■□□□□ 0.28
SCN4AP35499 ISL1-203ENST00000511384 981 ntTSL 5 BASIC16.8■□□□□ 0.28
SCN4AP35499 MBP-230ENST00000528160 584 ntTSL 5 BASIC16.8■□□□□ 0.28
SCN4AP35499 AP003040.1-201ENST00000532044 1024 ntBASIC16.8■□□□□ 0.28
SCN4AP35499 AC132825.4-202ENST00000578792 434 ntBASIC16.8■□□□□ 0.28
SCN4AP35499 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC16.8■□□□□ 0.28
SCN4AP35499 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC16.8■□□□□ 0.28
SCN4AP35499 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC16.8■□□□□ 0.28
SCN4AP35499 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCN4AP35499 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.8■□□□□ 0.28
SCN4AP35499 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SCN4AP35499 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.8■□□□□ 0.28
SCN4AP35499 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCN4AP35499 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SCN4AP35499 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCN4AP35499 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC16.8■□□□□ 0.28
SCN4AP35499 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCN4AP35499 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SCN4AP35499 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC16.8■□□□□ 0.28
SCN4AP35499 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SCN4AP35499 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC16.8■□□□□ 0.28
SCN4AP35499 RNA5SP491-201ENST00000362936 118 ntBASIC16.8■□□□□ 0.28
SCN4AP35499 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SCN4AP35499 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCN4AP35499 KRT19P4-201ENST00000443208 943 ntBASIC16.8■□□□□ 0.28
SCN4AP35499 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC16.8■□□□□ 0.28
SCN4AP35499 RN7SL684P-201ENST00000465665 294 ntBASIC16.8■□□□□ 0.28
SCN4AP35499 DPY19L2P4-201ENST00000479881 442 ntBASIC16.8■□□□□ 0.28
SCN4AP35499 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC16.8■□□□□ 0.28
SCN4AP35499 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC16.8■□□□□ 0.28
SCN4AP35499 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC16.8■□□□□ 0.28
SCN4AP35499 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.79■□□□□ 0.28
SCN4AP35499 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC16.79■□□□□ 0.28
SCN4AP35499 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SCN4AP35499 LINC00115-201ENST00000473798 1317 ntBASIC16.79■□□□□ 0.28
SCN4AP35499 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.79■□□□□ 0.28
SCN4AP35499 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SCN4AP35499 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SCN4AP35499 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC16.79■□□□□ 0.28
SCN4AP35499 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.79■□□□□ 0.28
SCN4AP35499 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.79■□□□□ 0.28
SCN4AP35499 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.79■□□□□ 0.28
SCN4AP35499 HDGF-202ENST00000368206 960 ntTSL 5 BASIC16.79■□□□□ 0.28
SCN4AP35499 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC16.79■□□□□ 0.28
SCN4AP35499 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC16.79■□□□□ 0.28
SCN4AP35499 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC16.79■□□□□ 0.28
SCN4AP35499 AC112250.1-201ENST00000504640 745 ntBASIC16.79■□□□□ 0.28
SCN4AP35499 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SCN4AP35499 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC16.79■□□□□ 0.28
SCN4AP35499 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC16.79■□□□□ 0.28
SCN4AP35499 AC048382.6-201ENST00000621980 1223 ntBASIC16.79■□□□□ 0.28
SCN4AP35499 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.79■□□□□ 0.28
SCN4AP35499 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC16.79■□□□□ 0.28
SCN4AP35499 AC064801.2-201ENST00000625052 1303 ntBASIC16.79■□□□□ 0.28
SCN4AP35499 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCN4AP35499 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SCN4AP35499 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
SCN4AP35499 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC16.78■□□□□ 0.28
SCN4AP35499 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC16.78■□□□□ 0.28
SCN4AP35499 AC006328.1-201ENST00000437571 379 ntBASIC16.78■□□□□ 0.28
SCN4AP35499 HNRNPA1P10-201ENST00000444945 962 ntBASIC16.78■□□□□ 0.28
SCN4AP35499 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC16.78■□□□□ 0.28
SCN4AP35499 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC16.78■□□□□ 0.28
SCN4AP35499 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC16.78■□□□□ 0.28
SCN4AP35499 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.78■□□□□ 0.28
SCN4AP35499 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SCN4AP35499 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SCN4AP35499 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SCN4AP35499 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
SCN4AP35499 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SCN4AP35499 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.78■□□□□ 0.28
SCN4AP35499 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SCN4AP35499 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SCN4AP35499 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SCN4AP35499 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
SCN4AP35499 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SCN4AP35499 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
SCN4AP35499 JPT2-203ENST00000382711 894 ntTSL 4 BASIC16.77■□□□□ 0.28
SCN4AP35499 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
SCN4AP35499 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms