Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SNORA57-201ENST00000383870 149 ntBASIC17.09■□□□□ 0.33
COL4A5P29400 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL4A5P29400 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL4A5P29400 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC17.09■□□□□ 0.33
COL4A5P29400 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC17.09■□□□□ 0.33
COL4A5P29400 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A5P29400 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A5P29400 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC17.09■□□□□ 0.33
COL4A5P29400 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC17.09■□□□□ 0.33
COL4A5P29400 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL4A5P29400 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL4A5P29400 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
COL4A5P29400 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A5P29400 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A5P29400 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A5P29400 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A5P29400 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A5P29400 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
COL4A5P29400 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A5P29400 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A5P29400 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.08■□□□□ 0.32
COL4A5P29400 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC17.08■□□□□ 0.32
COL4A5P29400 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A5P29400 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
COL4A5P29400 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A5P29400 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A5P29400 AP000354.1-201ENST00000396982 456 ntBASIC17.08■□□□□ 0.32
COL4A5P29400 NRADDP-201ENST00000437305 691 ntBASIC17.08■□□□□ 0.32
COL4A5P29400 HNRNPA1P42-201ENST00000458678 957 ntBASIC17.08■□□□□ 0.32
COL4A5P29400 AC093300.1-201ENST00000510368 1201 ntBASIC17.08■□□□□ 0.32
COL4A5P29400 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A5P29400 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A5P29400 AGAP7P-201ENST00000582299 2062 ntBASIC17.08■□□□□ 0.32
COL4A5P29400 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A5P29400 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
COL4A5P29400 AC073869.4-201ENST00000620841 800 ntBASIC17.08■□□□□ 0.32
COL4A5P29400 AGAP14-201ENST00000624701 2060 ntBASIC17.08■□□□□ 0.32
COL4A5P29400 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.08■□□□□ 0.32
COL4A5P29400 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
COL4A5P29400 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A5P29400 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC17.08■□□□□ 0.32
COL4A5P29400 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
COL4A5P29400 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A5P29400 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
COL4A5P29400 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
COL4A5P29400 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A5P29400 AC008536.3-201ENST00000623282 1599 ntBASIC17.08■□□□□ 0.32
COL4A5P29400 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL4A5P29400 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL4A5P29400 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC17.07■□□□□ 0.32
COL4A5P29400 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC17.07■□□□□ 0.32
COL4A5P29400 AC027612.2-202ENST00000445955 1199 ntBASIC17.07■□□□□ 0.32
COL4A5P29400 VENTXP4-201ENST00000449029 958 ntBASIC17.07■□□□□ 0.32
COL4A5P29400 AC100858.1-201ENST00000514059 1228 ntBASIC17.07■□□□□ 0.32
COL4A5P29400 AC092612.1-201ENST00000514501 998 ntBASIC17.07■□□□□ 0.32
COL4A5P29400 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC17.07■□□□□ 0.32
COL4A5P29400 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC17.07■□□□□ 0.32
COL4A5P29400 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
COL4A5P29400 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC17.07■□□□□ 0.32
COL4A5P29400 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
COL4A5P29400 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC17.07■□□□□ 0.32
COL4A5P29400 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC17.07■□□□□ 0.32
COL4A5P29400 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.07■□□□□ 0.32
COL4A5P29400 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 AP000244.1-201ENST00000424582 201 ntBASIC17.07■□□□□ 0.32
COL4A5P29400 SOD2-205ENST00000444946 917 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 AC023906.1-201ENST00000486386 453 ntBASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms