Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC12.86□□□□□ -0.35
COL8A1P27658 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC12.86□□□□□ -0.35
COL8A1P27658 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC12.86□□□□□ -0.35
COL8A1P27658 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
COL8A1P27658 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
COL8A1P27658 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 ENPP7P8-202ENST00000527856 1345 ntBASIC12.86□□□□□ -0.35
COL8A1P27658 AC084364.1-201ENST00000551967 1556 ntBASIC12.86□□□□□ -0.35
COL8A1P27658 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC12.86□□□□□ -0.35
COL8A1P27658 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.85□□□□□ -0.35
COL8A1P27658 SLC9A7P1-201ENST00000554295 3311 ntBASIC12.85□□□□□ -0.35
COL8A1P27658 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC12.85□□□□□ -0.35
COL8A1P27658 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL8A1P27658 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC12.85□□□□□ -0.35
COL8A1P27658 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
COL8A1P27658 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.85□□□□□ -0.35
COL8A1P27658 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 HLA-DQB1-202ENST00000399079 1501 ntBASIC12.85□□□□□ -0.35
COL8A1P27658 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 HLA-DMA-203ENST00000395305 777 ntBASIC12.85□□□□□ -0.35
COL8A1P27658 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC12.85□□□□□ -0.35
COL8A1P27658 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC12.85□□□□□ -0.35
COL8A1P27658 TSPY25P-201ENST00000429463 745 ntBASIC12.85□□□□□ -0.35
COL8A1P27658 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 LINC01090-202ENST00000434418 560 ntTSL 5 BASIC12.85□□□□□ -0.35
COL8A1P27658 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC12.85□□□□□ -0.35
COL8A1P27658 DPY19L2P5-201ENST00000456300 331 ntBASIC12.85□□□□□ -0.35
COL8A1P27658 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC12.85□□□□□ -0.35
COL8A1P27658 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC12.85□□□□□ -0.35
COL8A1P27658 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC12.85□□□□□ -0.35
COL8A1P27658 AL139317.3-201ENST00000555969 898 ntTSL 2 BASIC12.85□□□□□ -0.35
COL8A1P27658 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC12.85□□□□□ -0.35
COL8A1P27658 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 AC138696.2-201ENST00000607376 223 ntBASIC12.85□□□□□ -0.35
COL8A1P27658 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 CMC2-224ENST00000630396 481 ntTSL 5 BASIC12.85□□□□□ -0.35
COL8A1P27658 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC12.85□□□□□ -0.35
COL8A1P27658 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
COL8A1P27658 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
COL8A1P27658 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC12.85□□□□□ -0.35
COL8A1P27658 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL8A1P27658 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
COL8A1P27658 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
COL8A1P27658 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC12.84□□□□□ -0.35
COL8A1P27658 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
COL8A1P27658 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC12.84□□□□□ -0.35
COL8A1P27658 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
COL8A1P27658 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC12.84□□□□□ -0.35
COL8A1P27658 AC144522.1-201ENST00000625111 1658 ntBASIC12.84□□□□□ -0.35
COL8A1P27658 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC12.84□□□□□ -0.35
COL8A1P27658 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC12.84□□□□□ -0.35
COL8A1P27658 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL8A1P27658 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
COL8A1P27658 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC12.84□□□□□ -0.35
COL8A1P27658 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC12.84□□□□□ -0.35
COL8A1P27658 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC12.84□□□□□ -0.35
COL8A1P27658 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC12.84□□□□□ -0.35
COL8A1P27658 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC12.84□□□□□ -0.35
COL8A1P27658 ABHD17AP9-201ENST00000561925 548 ntBASIC12.84□□□□□ -0.35
COL8A1P27658 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms