Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
HLA-DQB2P05538 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQB2P05538 DUX4L46-201ENST00000566845 751 ntBASIC14.91□□□□□ -0.02
HLA-DQB2P05538 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HLA-DQB2P05538 AC010328.2-201ENST00000597698 1111 ntBASIC14.91□□□□□ -0.02
HLA-DQB2P05538 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQB2P05538 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-DQB2P05538 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQB2P05538 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.91□□□□□ -0.02
HLA-DQB2P05538 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQB2P05538 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-DQB2P05538 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-DQB2P05538 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.9□□□□□ -0.02
HLA-DQB2P05538 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 AC027237.1-201ENST00000560942 655 ntBASIC14.9□□□□□ -0.02
HLA-DQB2P05538 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 AC244157.2-201ENST00000616239 1006 ntBASIC14.9□□□□□ -0.02
HLA-DQB2P05538 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HLA-DQB2P05538 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 RNA5SP412-201ENST00000516234 123 ntBASIC14.89□□□□□ -0.03
HLA-DQB2P05538 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 AC244394.1-201ENST00000435000 1665 ntBASIC14.89□□□□□ -0.03
HLA-DQB2P05538 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HLA-DQB2P05538 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
HLA-DQB2P05538 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DQB2P05538 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms