Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC16.05■□□□□ 0.16
RNF40O75150 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RNF40O75150 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.05■□□□□ 0.16
RNF40O75150 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF40O75150 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC16.04■□□□□ 0.16
RNF40O75150 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
RNF40O75150 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
RNF40O75150 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
RNF40O75150 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF40O75150 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
RNF40O75150 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF40O75150 AC087386.2-201ENST00000623212 4637 ntBASIC16.04■□□□□ 0.16
RNF40O75150 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF40O75150 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF40O75150 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.04■□□□□ 0.16
RNF40O75150 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.04■□□□□ 0.16
RNF40O75150 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC16.04■□□□□ 0.16
RNF40O75150 AC010181.2-201ENST00000483759 482 ntTSL 3 BASIC16.04■□□□□ 0.16
RNF40O75150 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.04■□□□□ 0.16
RNF40O75150 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.04■□□□□ 0.16
RNF40O75150 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.04■□□□□ 0.16
RNF40O75150 AC006518.1-201ENST00000541449 943 ntBASIC16.04■□□□□ 0.16
RNF40O75150 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC16.04■□□□□ 0.16
RNF40O75150 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF40O75150 MIR6787-201ENST00000616675 61 ntBASIC16.04■□□□□ 0.16
RNF40O75150 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.04■□□□□ 0.16
RNF40O75150 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
RNF40O75150 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.04■□□□□ 0.16
RNF40O75150 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
RNF40O75150 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
RNF40O75150 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
RNF40O75150 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
RNF40O75150 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
RNF40O75150 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
RNF40O75150 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
RNF40O75150 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
RNF40O75150 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.03■□□□□ 0.16
RNF40O75150 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 AC007551.1-201ENST00000457394 519 ntBASIC16.03■□□□□ 0.16
RNF40O75150 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.03■□□□□ 0.16
RNF40O75150 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.03■□□□□ 0.16
RNF40O75150 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC16.03■□□□□ 0.16
RNF40O75150 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.03■□□□□ 0.16
RNF40O75150 CLUHP6-201ENST00000580789 941 ntBASIC16.03■□□□□ 0.16
RNF40O75150 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.03■□□□□ 0.16
RNF40O75150 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
RNF40O75150 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC16.03■□□□□ 0.16
RNF40O75150 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
RNF40O75150 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
RNF40O75150 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC16.03■□□□□ 0.16
RNF40O75150 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RNF40O75150 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms