Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 AC015802.1-201ENST00000588104 1449 ntBASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 POM121L10P-201ENST00000436994 1285 ntBASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 TPT1P11-201ENST00000458482 498 ntBASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 AL136301.1-201ENST00000615830 422 ntBASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 AC018735.1-201ENST00000437208 1502 ntBASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A3BPQ9Y5P4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 GPAA1P2-201ENST00000417923 928 ntBASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 AL354877.1-201ENST00000424412 413 ntBASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL4A3BPQ9Y5P4 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A3BPQ9Y5P4 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A3BPQ9Y5P4 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A3BPQ9Y5P4 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A3BPQ9Y5P4 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
COL4A3BPQ9Y5P4 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A3BPQ9Y5P4 AGGF1P1-201ENST00000509500 2073 ntBASIC16.46■□□□□ 0.23
COL4A3BPQ9Y5P4 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL4A3BPQ9Y5P4 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms