Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RPH3AQ9Y2J0 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 AC067750.1-201ENST00000608826 6545 ntBASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 FAM21FP-201ENST00000426241 1131 ntBASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 YBX1P6-201ENST00000442962 1002 ntBASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 RNA5SP412-201ENST00000516234 123 ntBASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 AC026748.1-201ENST00000624349 3251 ntBASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 CICP23-201ENST00000605013 2741 ntBASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 FKBP4P6-201ENST00000457486 1332 ntBASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.63□□□□□ -0.23
RPH3AQ9Y2J0 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AC108725.1-201ENST00000495472 409 ntBASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 FTLP10-202ENST00000505798 471 ntBASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AL391280.1-201ENST00000506969 1062 ntBASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 RNA5SP423-201ENST00000517127 109 ntBASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AC010328.2-201ENST00000597698 1111 ntBASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AC009542.2-202ENST00000619004 1067 ntBASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AC138466.3-201ENST00000619983 221 ntBASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AC008687.7-202ENST00000637404 953 ntBASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 AC107918.4-201ENST00000641966 3141 ntBASIC13.62□□□□□ -0.23
RPH3AQ9Y2J0 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms