Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 CR383656.3-201ENST00000551315 183 ntBASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 AC009145.4-201ENST00000625119 1294 ntBASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 AL451007.2-201ENST00000632004 563 ntBASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 MARK2P16-201ENST00000605714 1723 ntBASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
SHROOM4Q9ULL8 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 AQP7P5-201ENST00000428759 1049 ntBASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 AQP7P4-201ENST00000447083 1042 ntBASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 AQP7P2-201ENST00000453967 1041 ntBASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 DPY19L2P5-201ENST00000456300 331 ntBASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 AC093909.3-201ENST00000504783 336 ntBASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 AL022334.2-201ENST00000610000 484 ntBASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 AQP7P3-201ENST00000624547 1041 ntBASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SHROOM4Q9ULL8 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AC022532.1-201ENST00000624563 1728 ntBASIC27.57■■■□□ 2
SHROOM4Q9ULL8 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 PTPA-215ENST00000432124 567 ntTSL 4 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AC012073.1-201ENST00000606114 1108 ntBASIC27.57■■■□□ 2
SHROOM4Q9ULL8 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC27.57■■■□□ 2
SHROOM4Q9ULL8 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC27.56■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms