Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 AC012441.1-201ENST00000446669 685 ntBASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 AC004233.3-201ENST00000607794 1269 ntBASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 AC073548.1-201ENST00000624088 1882 ntBASIC16.08■□□□□ 0.16
LIMA1Q9UHB6 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 BAATP1-201ENST00000412284 1225 ntBASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 AC027237.1-201ENST00000560942 655 ntBASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 AC104506.1-201ENST00000609247 429 ntBASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 RPSAP52-203ENST00000622976 1023 ntBASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
LIMA1Q9UHB6 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 AC079781.5-202ENST00000641784 3743 ntBASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 TCAF1P1-201ENST00000414990 2232 ntBASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 MIR661-201ENST00000384842 89 ntBASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 AL161932.2-201ENST00000435436 679 ntBASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 TSPY16P-201ENST00000449843 468 ntBASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 CYMP-203ENST00000474680 1263 ntBASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 WASH4P-201ENST00000564273 1246 ntBASIC16.06■□□□□ 0.16
LIMA1Q9UHB6 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms