Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 TUBB8P8-201ENST00000458717 1058 ntBASIC16.05■□□□□ 0.16
VPS52Q8N1B4 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 AC013355.1-201ENST00000562625 723 ntBASIC16.05■□□□□ 0.16
VPS52Q8N1B4 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 AC026740.1-201ENST00000607068 791 ntBASIC16.05■□□□□ 0.16
VPS52Q8N1B4 AL358472.3-201ENST00000608147 415 ntBASIC16.05■□□□□ 0.16
VPS52Q8N1B4 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 AC100757.4-201ENST00000626934 759 ntBASIC16.05■□□□□ 0.16
VPS52Q8N1B4 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 CICP24-201ENST00000605464 2705 ntBASIC16.05■□□□□ 0.16
VPS52Q8N1B4 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 AC067750.1-201ENST00000608826 6545 ntBASIC16.05■□□□□ 0.16
VPS52Q8N1B4 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 AC004899.1-201ENST00000424687 1714 ntBASIC16.05■□□□□ 0.16
VPS52Q8N1B4 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS52Q8N1B4 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 AC023024.2-201ENST00000623561 1993 ntBASIC16.04■□□□□ 0.16
VPS52Q8N1B4 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 RN7SKP175-201ENST00000408472 289 ntBASIC16.04■□□□□ 0.16
VPS52Q8N1B4 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 AC104073.2-201ENST00000453737 312 ntBASIC16.04■□□□□ 0.16
VPS52Q8N1B4 FGFR3P5-201ENST00000564496 886 ntBASIC16.04■□□□□ 0.16
VPS52Q8N1B4 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 AC002472.3-201ENST00000640124 621 ntBASIC16.04■□□□□ 0.16
VPS52Q8N1B4 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS52Q8N1B4 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AC008132.1-202ENST00000342005 1389 ntBASIC16.03■□□□□ 0.16
VPS52Q8N1B4 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 AC091046.1-201ENST00000331871 207 ntBASIC16.03■□□□□ 0.16
VPS52Q8N1B4 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS52Q8N1B4 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms