Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
PKNOX1P55347 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
PKNOX1P55347 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
PKNOX1P55347 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
PKNOX1P55347 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.54□□□□□ -0.08
PKNOX1P55347 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
PKNOX1P55347 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.54□□□□□ -0.08
PKNOX1P55347 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.54□□□□□ -0.08
PKNOX1P55347 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.54□□□□□ -0.08
PKNOX1P55347 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.54□□□□□ -0.08
PKNOX1P55347 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.54□□□□□ -0.08
PKNOX1P55347 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.54□□□□□ -0.08
PKNOX1P55347 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
PKNOX1P55347 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.54□□□□□ -0.08
PKNOX1P55347 AC016397.2-201ENST00000624848 1985 ntBASIC14.54□□□□□ -0.08
PKNOX1P55347 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.54□□□□□ -0.08
PKNOX1P55347 TCAF1P1-201ENST00000414990 2232 ntBASIC14.54□□□□□ -0.08
PKNOX1P55347 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.54□□□□□ -0.08
PKNOX1P55347 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
PKNOX1P55347 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
PKNOX1P55347 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
PKNOX1P55347 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
PKNOX1P55347 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.53□□□□□ -0.08
PKNOX1P55347 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.53□□□□□ -0.08
PKNOX1P55347 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.53□□□□□ -0.08
PKNOX1P55347 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
PKNOX1P55347 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.53□□□□□ -0.08
PKNOX1P55347 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
PKNOX1P55347 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
PKNOX1P55347 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.53□□□□□ -0.08
PKNOX1P55347 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.53□□□□□ -0.08
PKNOX1P55347 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.53□□□□□ -0.08
PKNOX1P55347 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.53□□□□□ -0.08
PKNOX1P55347 RNA5SP421-201ENST00000516864 134 ntBASIC14.53□□□□□ -0.08
PKNOX1P55347 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
PKNOX1P55347 AC092552.1-201ENST00000547243 906 ntBASIC14.53□□□□□ -0.08
PKNOX1P55347 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms