Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
CDH6P55285 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.37■□□□□ 0.05
CDH6P55285 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 AC012617.1-204ENST00000586340 2305 ntBASIC15.37■□□□□ 0.05
CDH6P55285 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.37■□□□□ 0.05
CDH6P55285 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CDH6P55285 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 KRT43P-201ENST00000434019 910 ntBASIC15.37■□□□□ 0.05
CDH6P55285 FAM8A4P-201ENST00000435433 1213 ntBASIC15.37■□□□□ 0.05
CDH6P55285 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.37■□□□□ 0.05
CDH6P55285 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.37■□□□□ 0.05
CDH6P55285 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 BX088702.1-201ENST00000610784 235 ntBASIC15.37■□□□□ 0.05
CDH6P55285 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 AP001002.3-201ENST00000623482 206 ntBASIC15.37■□□□□ 0.05
CDH6P55285 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.37■□□□□ 0.05
CDH6P55285 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
CDH6P55285 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 AC006504.5-208ENST00000588784 2401 ntBASIC15.37■□□□□ 0.05
CDH6P55285 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.37■□□□□ 0.05
CDH6P55285 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH6P55285 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CDH6P55285 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH6P55285 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CDH6P55285 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CDH6P55285 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CDH6P55285 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.36■□□□□ 0.05
CDH6P55285 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 AC215219.1-201ENST00000400706 1817 ntBASIC15.36■□□□□ 0.05
CDH6P55285 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.36■□□□□ 0.05
CDH6P55285 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.36■□□□□ 0.05
CDH6P55285 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
CDH6P55285 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.36■□□□□ 0.05
CDH6P55285 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.36■□□□□ 0.05
CDH6P55285 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.36■□□□□ 0.05
CDH6P55285 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.36■□□□□ 0.05
CDH6P55285 AC007551.1-201ENST00000457394 519 ntBASIC15.36■□□□□ 0.05
CDH6P55285 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.36■□□□□ 0.05
CDH6P55285 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 AP003171.2-201ENST00000528208 925 ntBASIC15.36■□□□□ 0.05
CDH6P55285 AC078819.1-201ENST00000547454 765 ntBASIC15.36■□□□□ 0.05
CDH6P55285 AC012085.1-201ENST00000548270 765 ntBASIC15.36■□□□□ 0.05
CDH6P55285 AC103988.2-201ENST00000561804 725 ntBASIC15.36■□□□□ 0.05
CDH6P55285 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.36■□□□□ 0.05
CDH6P55285 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.36■□□□□ 0.05
CDH6P55285 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.36■□□□□ 0.05
CDH6P55285 AC138951.2-201ENST00000623455 1161 ntBASIC15.36■□□□□ 0.05
CDH6P55285 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.36■□□□□ 0.05
CDH6P55285 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 RN7SL832P-201ENST00000607781 1756 ntBASIC15.36■□□□□ 0.05
CDH6P55285 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.36■□□□□ 0.05
CDH6P55285 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CDH6P55285 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC15.36■□□□□ 0.05
CDH6P55285 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.36■□□□□ 0.05
CDH6P55285 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.36■□□□□ 0.05
CDH6P55285 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDH6P55285 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.36■□□□□ 0.05
CDH6P55285 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CDH6P55285 AC139712.1-201ENST00000378256 1875 ntBASIC15.35■□□□□ 0.05
CDH6P55285 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CDH6P55285 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
CDH6P55285 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CDH6P55285 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms