Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
MSH6P52701 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC19.96■□□□□ 0.79
MSH6P52701 DUT-207ENST00000559416 635 ntTSL 2 BASIC19.96■□□□□ 0.79
MSH6P52701 AC140658.4-201ENST00000561990 352 ntBASIC19.96■□□□□ 0.79
MSH6P52701 AC145285.5-201ENST00000562217 361 ntBASIC19.96■□□□□ 0.79
MSH6P52701 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
MSH6P52701 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
MSH6P52701 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.96■□□□□ 0.79
MSH6P52701 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC19.96■□□□□ 0.79
MSH6P52701 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
MSH6P52701 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
MSH6P52701 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC19.96■□□□□ 0.79
MSH6P52701 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
MSH6P52701 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC19.96■□□□□ 0.79
MSH6P52701 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 MSANTD2P1-201ENST00000445341 1368 ntBASIC19.96■□□□□ 0.79
MSH6P52701 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC19.96■□□□□ 0.79
MSH6P52701 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.96■□□□□ 0.79
MSH6P52701 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH6P52701 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
MSH6P52701 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
MSH6P52701 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.79
MSH6P52701 OR7E115P-201ENST00000382617 1024 ntBASIC19.95■□□□□ 0.79
MSH6P52701 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC19.95■□□□□ 0.79
MSH6P52701 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC19.95■□□□□ 0.79
MSH6P52701 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC19.95■□□□□ 0.79
MSH6P52701 KRT8P30-201ENST00000432100 650 ntBASIC19.95■□□□□ 0.79
MSH6P52701 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC19.95■□□□□ 0.79
MSH6P52701 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC19.95■□□□□ 0.79
MSH6P52701 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC19.95■□□□□ 0.79
MSH6P52701 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC19.95■□□□□ 0.79
MSH6P52701 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.79
MSH6P52701 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC19.95■□□□□ 0.79
MSH6P52701 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
MSH6P52701 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC19.95■□□□□ 0.78
MSH6P52701 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC19.95■□□□□ 0.78
MSH6P52701 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH6P52701 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH6P52701 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
MSH6P52701 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH6P52701 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH6P52701 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
MSH6P52701 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH6P52701 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
MSH6P52701 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH6P52701 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH6P52701 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH6P52701 AC027612.2-202ENST00000445955 1199 ntBASIC19.95■□□□□ 0.78
MSH6P52701 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC19.95■□□□□ 0.78
MSH6P52701 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC19.95■□□□□ 0.78
MSH6P52701 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC19.95■□□□□ 0.78
MSH6P52701 TYMSP2-201ENST00000589501 424 ntBASIC19.95■□□□□ 0.78
MSH6P52701 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
MSH6P52701 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
MSH6P52701 AC019109.1-201ENST00000401725 1874 ntBASIC19.94■□□□□ 0.78
MSH6P52701 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
MSH6P52701 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
MSH6P52701 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
MSH6P52701 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.94■□□□□ 0.78
MSH6P52701 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MSH6P52701 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC19.94■□□□□ 0.78
MSH6P52701 AC104961.1-201ENST00000427605 771 ntBASIC19.94■□□□□ 0.78
MSH6P52701 EEF1DP5-201ENST00000431410 772 ntBASIC19.94■□□□□ 0.78
MSH6P52701 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC19.94■□□□□ 0.78
MSH6P52701 RPS18P9-201ENST00000482817 460 ntBASIC19.94■□□□□ 0.78
MSH6P52701 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC19.94■□□□□ 0.78
MSH6P52701 SEPHS2P1-201ENST00000511618 1162 ntBASIC19.94■□□□□ 0.78
MSH6P52701 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms