Protein–RNA interactions for Protein: P39059

COL15A1, Collagen alpha-1(XV) chain, humanhuman

Predictions only

Length 1,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL15A1P39059 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COL15A1P39059 CD164-210ENST00000512821 964 ntTSL 2 BASIC18.4■□□□□ 0.54
COL15A1P39059 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL15A1P39059 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC18.4■□□□□ 0.54
COL15A1P39059 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.4■□□□□ 0.54
COL15A1P39059 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC18.4■□□□□ 0.54
COL15A1P39059 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC18.4■□□□□ 0.54
COL15A1P39059 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.4■□□□□ 0.54
COL15A1P39059 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC18.4■□□□□ 0.54
COL15A1P39059 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COL15A1P39059 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL15A1P39059 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL15A1P39059 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL15A1P39059 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL15A1P39059 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
COL15A1P39059 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL15A1P39059 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL15A1P39059 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL15A1P39059 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC18.39■□□□□ 0.53
COL15A1P39059 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
COL15A1P39059 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
COL15A1P39059 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL15A1P39059 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL15A1P39059 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
COL15A1P39059 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC18.39■□□□□ 0.53
COL15A1P39059 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL15A1P39059 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC18.39■□□□□ 0.53
COL15A1P39059 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC18.39■□□□□ 0.53
COL15A1P39059 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC18.39■□□□□ 0.53
COL15A1P39059 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC18.39■□□□□ 0.53
COL15A1P39059 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC18.39■□□□□ 0.53
COL15A1P39059 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC18.39■□□□□ 0.53
COL15A1P39059 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL15A1P39059 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL15A1P39059 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.38■□□□□ 0.53
COL15A1P39059 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC18.38■□□□□ 0.53
COL15A1P39059 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC18.38■□□□□ 0.53
COL15A1P39059 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL15A1P39059 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.38■□□□□ 0.53
COL15A1P39059 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 MIR1227-201ENST00000408484 88 ntBASIC18.38■□□□□ 0.53
COL15A1P39059 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.38■□□□□ 0.53
COL15A1P39059 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC18.38■□□□□ 0.53
COL15A1P39059 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC18.38■□□□□ 0.53
COL15A1P39059 ALG1L6P-201ENST00000515248 758 ntBASIC18.38■□□□□ 0.53
COL15A1P39059 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 AC138466.5-201ENST00000624002 808 ntBASIC18.38■□□□□ 0.53
COL15A1P39059 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC18.38■□□□□ 0.53
COL15A1P39059 AL354702.1-201ENST00000442006 1960 ntBASIC18.38■□□□□ 0.53
COL15A1P39059 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC18.38■□□□□ 0.53
COL15A1P39059 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL15A1P39059 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL15A1P39059 AC103702.1-201ENST00000548801 2630 ntBASIC18.38■□□□□ 0.53
COL15A1P39059 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC18.37■□□□□ 0.53
COL15A1P39059 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL15A1P39059 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
COL15A1P39059 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL15A1P39059 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC18.37■□□□□ 0.53
COL15A1P39059 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC18.37■□□□□ 0.53
COL15A1P39059 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC18.37■□□□□ 0.53
COL15A1P39059 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL15A1P39059 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.37■□□□□ 0.53
COL15A1P39059 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC18.37■□□□□ 0.53
COL15A1P39059 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC18.37■□□□□ 0.53
COL15A1P39059 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC18.37■□□□□ 0.53
COL15A1P39059 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
COL15A1P39059 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 RN7SKP109-201ENST00000410592 316 ntBASIC18.37■□□□□ 0.53
COL15A1P39059 DPY19L2P5-201ENST00000456300 331 ntBASIC18.37■□□□□ 0.53
COL15A1P39059 LINC00634-202ENST00000505157 222 ntBASIC18.37■□□□□ 0.53
COL15A1P39059 RNA5SP417-201ENST00000516459 108 ntBASIC18.37■□□□□ 0.53
COL15A1P39059 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL15A1P39059 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC18.37■□□□□ 0.53
COL15A1P39059 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.37■□□□□ 0.53
COL15A1P39059 DBP-202ENST00000593500 712 ntTSL 2 BASIC18.37■□□□□ 0.53
COL15A1P39059 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms