Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC17.9■□□□□ 0.46
COL5A3P25940 GSN-209ENST00000449733 2702 ntTSL 2 BASIC17.9■□□□□ 0.46
COL5A3P25940 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.9■□□□□ 0.46
COL5A3P25940 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL5A3P25940 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
COL5A3P25940 U3.5-201ENST00000363448 216 ntBASIC17.89■□□□□ 0.46
COL5A3P25940 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC17.89■□□□□ 0.46
COL5A3P25940 AC136604.1-202ENST00000425471 771 ntBASIC17.89■□□□□ 0.46
COL5A3P25940 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC17.89■□□□□ 0.46
COL5A3P25940 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL5A3P25940 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC17.89■□□□□ 0.46
COL5A3P25940 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC17.89■□□□□ 0.46
COL5A3P25940 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL5A3P25940 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL5A3P25940 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
COL5A3P25940 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
COL5A3P25940 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC17.89■□□□□ 0.45
COL5A3P25940 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC17.89■□□□□ 0.45
COL5A3P25940 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 AC090505.1-201ENST00000430515 1834 ntBASIC17.89■□□□□ 0.45
COL5A3P25940 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.89■□□□□ 0.45
COL5A3P25940 TBC1D27-202ENST00000424239 1573 ntBASIC17.89■□□□□ 0.45
COL5A3P25940 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.89■□□□□ 0.45
COL5A3P25940 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.89■□□□□ 0.45
COL5A3P25940 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.89■□□□□ 0.45
COL5A3P25940 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 WARS-203ENST00000358655 2466 ntTSL 2 BASIC17.89■□□□□ 0.45
COL5A3P25940 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
COL5A3P25940 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC17.89■□□□□ 0.45
COL5A3P25940 HLA-DMA-202ENST00000395303 1007 ntBASIC17.89■□□□□ 0.45
COL5A3P25940 ACTBP14-201ENST00000411655 1089 ntBASIC17.89■□□□□ 0.45
COL5A3P25940 AC092570.1-201ENST00000414446 469 ntBASIC17.89■□□□□ 0.45
COL5A3P25940 GALP-202ENST00000440823 889 ntTSL 5 BASIC17.89■□□□□ 0.45
COL5A3P25940 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC17.89■□□□□ 0.45
COL5A3P25940 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC17.89■□□□□ 0.45
COL5A3P25940 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC17.89■□□□□ 0.45
COL5A3P25940 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC17.89■□□□□ 0.45
COL5A3P25940 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC17.89■□□□□ 0.45
COL5A3P25940 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC17.89■□□□□ 0.45
COL5A3P25940 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A3P25940 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
COL5A3P25940 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
COL5A3P25940 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL5A3P25940 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.88■□□□□ 0.45
COL5A3P25940 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.88■□□□□ 0.45
COL5A3P25940 AC092115.1-201ENST00000566277 1402 ntBASIC17.88■□□□□ 0.45
COL5A3P25940 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 USP17L6P-201ENST00000382470 1197 ntBASIC17.88■□□□□ 0.45
COL5A3P25940 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC17.88■□□□□ 0.45
COL5A3P25940 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 CD81-209ENST00000492627 886 ntTSL 3 BASIC17.88■□□□□ 0.45
COL5A3P25940 CD44-224ENST00000526669 870 ntTSL 5 BASIC17.88■□□□□ 0.45
COL5A3P25940 AC132825.4-202ENST00000578792 434 ntBASIC17.88■□□□□ 0.45
COL5A3P25940 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
COL5A3P25940 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 LINC00554-201ENST00000564841 3011 ntBASIC17.88■□□□□ 0.45
COL5A3P25940 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A3P25940 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 AC104961.1-201ENST00000427605 771 ntBASIC17.87■□□□□ 0.45
COL5A3P25940 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
COL5A3P25940 ASS1P2-201ENST00000439895 1223 ntBASIC17.87■□□□□ 0.45
COL5A3P25940 SOD2-205ENST00000444946 917 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC17.87■□□□□ 0.45
COL5A3P25940 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC17.87■□□□□ 0.45
COL5A3P25940 ANKRD26P1-203ENST00000569528 966 ntBASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms