Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC15.12■□□□□ 0.01
HMGA1P17096 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGA1P17096 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 MIR3147-201ENST00000577811 66 ntBASIC15.12■□□□□ 0.01
HMGA1P17096 WDR7-208ENST00000589935 544 ntTSL 4 BASIC15.12■□□□□ 0.01
HMGA1P17096 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 AC009560.1-201ENST00000620208 434 ntBASIC15.12■□□□□ 0.01
HMGA1P17096 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC15.12■□□□□ 0.01
HMGA1P17096 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HMGA1P17096 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGA1P17096 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.11■□□□□ 0.01
HMGA1P17096 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.11■□□□□ 0.01
HMGA1P17096 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
HMGA1P17096 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC15.11■□□□□ 0.01
HMGA1P17096 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
HMGA1P17096 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGA1P17096 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 NOC2LP1-201ENST00000450578 752 ntBASIC15.11■□□□□ 0.01
HMGA1P17096 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 RN7SL277P-201ENST00000481521 288 ntBASIC15.11■□□□□ 0.01
HMGA1P17096 CD164-210ENST00000512821 964 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGA1P17096 AC114947.1-202ENST00000514136 344 ntBASIC15.11■□□□□ 0.01
HMGA1P17096 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC15.11■□□□□ 0.01
HMGA1P17096 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC15.11■□□□□ 0.01
HMGA1P17096 NAT9-224ENST00000583757 583 ntTSL 3 BASIC15.11■□□□□ 0.01
HMGA1P17096 AC021016.3-201ENST00000608367 477 ntBASIC15.11■□□□□ 0.01
HMGA1P17096 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC15.11■□□□□ 0.01
HMGA1P17096 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
HMGA1P17096 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.11■□□□□ 0.01
HMGA1P17096 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC15.11■□□□□ 0.01
HMGA1P17096 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
HMGA1P17096 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.11■□□□□ 0.01
HMGA1P17096 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
HMGA1P17096 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.11■□□□□ 0.01
HMGA1P17096 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
HMGA1P17096 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
HMGA1P17096 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
HMGA1P17096 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC15.11■□□□□ 0.01
HMGA1P17096 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
HMGA1P17096 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGA1P17096 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGA1P17096 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGA1P17096 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 AC023824.1-201ENST00000562945 2975 ntBASIC15.1■□□□□ 0.01
HMGA1P17096 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HMGA1P17096 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HMGA1P17096 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HMGA1P17096 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
HMGA1P17096 LAP3P2-201ENST00000454686 1454 ntBASIC15.1■□□□□ 0.01
HMGA1P17096 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGA1P17096 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGA1P17096 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGA1P17096 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC15.1■□□□□ 0.01
HMGA1P17096 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC15.1■□□□□ 0.01
HMGA1P17096 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC15.1■□□□□ 0.01
HMGA1P17096 FOS-204ENST00000554617 796 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGA1P17096 MIR5572-201ENST00000583188 137 ntBASIC15.1■□□□□ 0.01
HMGA1P17096 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGA1P17096 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGA1P17096 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
HMGA1P17096 AL805961.1-201ENST00000642026 753 ntBASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms