Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC13.31□□□□□ -0.28
SPTA1P02549 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.31□□□□□ -0.28
SPTA1P02549 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.31□□□□□ -0.28
SPTA1P02549 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 CTBP2P8-201ENST00000422584 1330 ntBASIC13.31□□□□□ -0.28
SPTA1P02549 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SPTA1P02549 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC13.3□□□□□ -0.28
SPTA1P02549 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC13.3□□□□□ -0.28
SPTA1P02549 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
SPTA1P02549 KRT17P5-201ENST00000332088 839 ntBASIC13.3□□□□□ -0.28
SPTA1P02549 STK16-203ENST00000409516 895 ntTSL 2 BASIC13.3□□□□□ -0.28
SPTA1P02549 RN7SKP109-201ENST00000410592 316 ntBASIC13.3□□□□□ -0.28
SPTA1P02549 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC13.3□□□□□ -0.28
SPTA1P02549 RNLS-203ENST00000437752 525 ntTSL 2 BASIC13.3□□□□□ -0.28
SPTA1P02549 GDNF-207ENST00000515058 764 ntTSL 5 BASIC13.3□□□□□ -0.28
SPTA1P02549 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC13.3□□□□□ -0.28
SPTA1P02549 AC008972.2-201ENST00000606587 494 ntBASIC13.3□□□□□ -0.28
SPTA1P02549 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC13.3□□□□□ -0.28
SPTA1P02549 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 PCDHA12-202ENST00000613593 2588 ntBASIC13.3□□□□□ -0.28
SPTA1P02549 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SPTA1P02549 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
SPTA1P02549 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.3□□□□□ -0.28
SPTA1P02549 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
SPTA1P02549 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC13.3□□□□□ -0.28
SPTA1P02549 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC13.3□□□□□ -0.28
SPTA1P02549 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 AC142086.5-202ENST00000562500 217 ntBASIC13.3□□□□□ -0.28
SPTA1P02549 AC055811.3-201ENST00000584952 686 ntBASIC13.3□□□□□ -0.28
SPTA1P02549 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC13.3□□□□□ -0.28
SPTA1P02549 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC13.3□□□□□ -0.28
SPTA1P02549 AC254633.1-201ENST00000606790 345 ntBASIC13.3□□□□□ -0.28
SPTA1P02549 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC13.3□□□□□ -0.28
SPTA1P02549 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
SPTA1P02549 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC13.3□□□□□ -0.28
SPTA1P02549 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 AHCYP4-201ENST00000419201 1315 ntBASIC13.3□□□□□ -0.28
SPTA1P02549 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC13.3□□□□□ -0.28
SPTA1P02549 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC13.3□□□□□ -0.28
SPTA1P02549 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SPTA1P02549 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
SPTA1P02549 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 LTB4R2-202ENST00000528054 3092 ntBASIC13.29□□□□□ -0.28
SPTA1P02549 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 AC011270.2-201ENST00000624293 2550 ntBASIC13.29□□□□□ -0.28
SPTA1P02549 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC13.29□□□□□ -0.28
SPTA1P02549 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
SPTA1P02549 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC13.29□□□□□ -0.28
SPTA1P02549 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SPTA1P02549 AC006122.1-201ENST00000493323 440 ntBASIC13.29□□□□□ -0.28
SPTA1P02549 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
SPTA1P02549 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC13.29□□□□□ -0.28
SPTA1P02549 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC13.29□□□□□ -0.28
SPTA1P02549 AC068867.1-201ENST00000559855 150 ntBASIC13.29□□□□□ -0.28
SPTA1P02549 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC13.29□□□□□ -0.28
SPTA1P02549 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
SPTA1P02549 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
SPTA1P02549 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
SPTA1P02549 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms