Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 AC041040.2-201ENST00000622926 2899 ntBASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 TERF1P3-201ENST00000505638 1227 ntBASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 PTP4A1P2-201ENST00000546033 454 ntBASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 AC138466.3-201ENST00000619983 221 ntBASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 AP001002.3-201ENST00000623482 206 ntBASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 AC134312.5-201ENST00000568031 1313 ntBASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 INE2-201ENST00000630399 1874 ntBASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 STK40-201ENST00000359297 4837 ntTSL 2 BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HIF3AQ9Y2N7 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 AC015688.4-201ENST00000580780 1647 ntBASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 BEND3P1-201ENST00000421591 1944 ntBASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 AL138709.1-201ENST00000614840 1693 ntBASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
HIF3AQ9Y2N7 AC016397.2-201ENST00000624848 1985 ntBASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms