Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 MIR4741-201ENST00000579822 90 ntBASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 MVK-217ENST00000639206 367 ntTSL 5 BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 KRT8P28-201ENST00000433288 1390 ntBASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMC4Q9NTJ3 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 AC027601.5-201ENST00000624065 2482 ntBASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 ADK-205ENST00000539909 1866 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 CICP12-201ENST00000455801 843 ntBASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 NCK2-206ENST00000522586 490 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 MFF-223ENST00000524634 647 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 SHC1P1-201ENST00000425230 1745 ntBASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMC4Q9NTJ3 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 MIR326-201ENST00000362220 95 ntBASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 AC010141.1-201ENST00000411585 623 ntBASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 ATP5G2P4-201ENST00000442175 420 ntBASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms