Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 PXK-210ENST00000479241 2817 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 THAP4-203ENST00000402545 833 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 AL157823.1-201ENST00000403727 628 ntBASIC14.15□□□□□ -0.14
VPS13AQ96RL7 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 GUCY2EP-203ENST00000531117 1918 ntBASIC14.15□□□□□ -0.14
VPS13AQ96RL7 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
VPS13AQ96RL7 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 RN7SL33P-201ENST00000462543 342 ntBASIC14.14□□□□□ -0.15
VPS13AQ96RL7 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 VENTXP3-201ENST00000546480 773 ntBASIC14.14□□□□□ -0.15
VPS13AQ96RL7 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 TEKT4P2-202ENST00000559466 1312 ntBASIC14.14□□□□□ -0.15
VPS13AQ96RL7 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 AC087481.3-201ENST00000602886 1894 ntBASIC14.14□□□□□ -0.15
VPS13AQ96RL7 KLF17P1-201ENST00000547105 1126 ntBASIC14.14□□□□□ -0.15
VPS13AQ96RL7 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 AC113385.2-201ENST00000614465 762 ntBASIC14.14□□□□□ -0.15
VPS13AQ96RL7 MIEF1-215ENST00000637854 213 ntBASIC14.14□□□□□ -0.15
VPS13AQ96RL7 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 AL365181.1-201ENST00000564032 1828 ntBASIC14.14□□□□□ -0.15
VPS13AQ96RL7 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13AQ96RL7 AC005014.1-201ENST00000432006 2976 ntBASIC14.13□□□□□ -0.15
VPS13AQ96RL7 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 ASS1P2-201ENST00000439895 1223 ntBASIC14.13□□□□□ -0.15
VPS13AQ96RL7 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 SRP14-208ENST00000560773 468 ntTSL 3 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 DERL2-206ENST00000572834 589 ntTSL 3 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 AC016582.2-202ENST00000587765 1094 ntBASIC14.13□□□□□ -0.15
VPS13AQ96RL7 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13AQ96RL7 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms