Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 KRT8P28-201ENST00000433288 1390 ntBASIC11.42□□□□□ -0.58
CCDC140Q96MF4 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 ADK-205ENST00000539909 1866 ntTSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 AC090505.1-201ENST00000430515 1834 ntBASIC11.42□□□□□ -0.58
CCDC140Q96MF4 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 CHMP1AP1-201ENST00000445563 662 ntBASIC11.42□□□□□ -0.58
CCDC140Q96MF4 HIST2H2BB-201ENST00000449108 381 ntBASIC11.42□□□□□ -0.58
CCDC140Q96MF4 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 AC023310.1-201ENST00000554836 735 ntBASIC11.42□□□□□ -0.58
CCDC140Q96MF4 HNRNPA1P48-202ENST00000565308 961 ntBASIC11.42□□□□□ -0.58
CCDC140Q96MF4 MIR6775-201ENST00000617557 69 ntBASIC11.42□□□□□ -0.58
CCDC140Q96MF4 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 TNN-203ENST00000622870 3719 ntTSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 AC012617.1-204ENST00000586340 2305 ntBASIC11.42□□□□□ -0.58
CCDC140Q96MF4 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 AC098934.1-201ENST00000443294 1835 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC11.42□□□□□ -0.58
CCDC140Q96MF4 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CCDC140Q96MF4 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms