Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HPS3Q969F9 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
HPS3Q969F9 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.35■□□□□ 0.21
HPS3Q969F9 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HPS3Q969F9 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC16.35■□□□□ 0.21
HPS3Q969F9 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HPS3Q969F9 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.35■□□□□ 0.21
HPS3Q969F9 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HPS3Q969F9 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HPS3Q969F9 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HPS3Q969F9 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HPS3Q969F9 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 AL590440.2-201ENST00000641973 1595 ntBASIC16.34■□□□□ 0.21
HPS3Q969F9 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.34■□□□□ 0.21
HPS3Q969F9 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.34■□□□□ 0.21
HPS3Q969F9 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.34■□□□□ 0.21
HPS3Q969F9 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC16.34■□□□□ 0.21
HPS3Q969F9 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC16.34■□□□□ 0.21
HPS3Q969F9 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.34■□□□□ 0.21
HPS3Q969F9 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
HPS3Q969F9 CD8B2-202ENST00000417670 633 ntBASIC16.34■□□□□ 0.21
HPS3Q969F9 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
HPS3Q969F9 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.34■□□□□ 0.21
HPS3Q969F9 PUDPP3-201ENST00000445368 636 ntBASIC16.34■□□□□ 0.21
HPS3Q969F9 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.34■□□□□ 0.21
HPS3Q969F9 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.34■□□□□ 0.21
HPS3Q969F9 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.34■□□□□ 0.21
HPS3Q969F9 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.34■□□□□ 0.21
HPS3Q969F9 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
HPS3Q969F9 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 C2orf69P2-201ENST00000562032 1123 ntBASIC16.34■□□□□ 0.21
HPS3Q969F9 AP006547.1-201ENST00000563435 692 ntBASIC16.34■□□□□ 0.21
HPS3Q969F9 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HPS3Q969F9 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
HPS3Q969F9 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.34■□□□□ 0.21
HPS3Q969F9 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
HPS3Q969F9 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HPS3Q969F9 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HPS3Q969F9 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HPS3Q969F9 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC16.33■□□□□ 0.21
HPS3Q969F9 AC090505.1-201ENST00000430515 1834 ntBASIC16.33■□□□□ 0.21
HPS3Q969F9 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
HPS3Q969F9 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.33■□□□□ 0.21
HPS3Q969F9 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
HPS3Q969F9 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
HPS3Q969F9 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC16.33■□□□□ 0.2
HPS3Q969F9 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
HPS3Q969F9 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HPS3Q969F9 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.33■□□□□ 0.2
HPS3Q969F9 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.33■□□□□ 0.2
HPS3Q969F9 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.33■□□□□ 0.2
HPS3Q969F9 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.33■□□□□ 0.2
HPS3Q969F9 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.33■□□□□ 0.2
HPS3Q969F9 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HPS3Q969F9 RAB43P1-201ENST00000561790 589 ntBASIC16.33■□□□□ 0.2
HPS3Q969F9 PPY2P-201ENST00000582808 702 ntBASIC16.33■□□□□ 0.2
HPS3Q969F9 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.33■□□□□ 0.2
HPS3Q969F9 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.33■□□□□ 0.2
HPS3Q969F9 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HPS3Q969F9 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.33■□□□□ 0.2
HPS3Q969F9 RHOXF1P1-202ENST00000635473 501 ntBASIC16.33■□□□□ 0.2
HPS3Q969F9 AHCYP2-201ENST00000430630 1300 ntBASIC16.33■□□□□ 0.2
HPS3Q969F9 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.33■□□□□ 0.2
HPS3Q969F9 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC16.33■□□□□ 0.2
HPS3Q969F9 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.33■□□□□ 0.2
HPS3Q969F9 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HPS3Q969F9 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.33■□□□□ 0.2
HPS3Q969F9 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC16.33■□□□□ 0.2
HPS3Q969F9 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms