Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 KRT8P24-201ENST00000560290 1559 ntBASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 WASH4P-201ENST00000564273 1246 ntBASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 AC008494.3-201ENST00000606615 944 ntBASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
ATG4AQ8WYN0 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
ATG4AQ8WYN0 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.05
ATG4AQ8WYN0 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
ATG4AQ8WYN0 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
ATG4AQ8WYN0 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
ATG4AQ8WYN0 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
ATG4AQ8WYN0 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.33■□□□□ 0.05
ATG4AQ8WYN0 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.05
ATG4AQ8WYN0 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 AC093433.1-201ENST00000458048 571 ntBASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 GCOM2-201ENST00000509133 1104 ntBASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 CU634019.7-201ENST00000624153 1185 ntBASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 FP236241.2-201ENST00000624906 1185 ntBASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
ATG4AQ8WYN0 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 CICP17-201ENST00000418553 2377 ntBASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC15.32■□□□□ 0.04
ATG4AQ8WYN0 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms