Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 ALG3P1-201ENST00000508806 1114 ntBASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 AC131206.1-201ENST00000538078 1211 ntBASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 PPY2P-201ENST00000582808 702 ntBASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 AC002472.3-201ENST00000640124 621 ntBASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 LINC00552-201ENST00000625151 2579 ntBASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 AC020910.5-201ENST00000623668 1865 ntBASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 INE2-201ENST00000630399 1874 ntBASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 AC140479.7-201ENST00000636301 2332 ntBASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 AC007191.1-201ENST00000623179 2995 ntBASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 AC113367.3-201ENST00000508316 1912 ntBASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 CHMP1AP1-201ENST00000445563 662 ntBASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 AL583810.1-201ENST00000553344 1045 ntBASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NUP54Q7Z3B4 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 KRT8P4-201ENST00000509735 1454 ntBASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 AC007686.3-201ENST00000619017 3487 ntBASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms