Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.02□□□□□ -0.17
LIM2P55344 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.02□□□□□ -0.17
LIM2P55344 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.02□□□□□ -0.17
LIM2P55344 AL358472.3-201ENST00000608147 415 ntBASIC14.02□□□□□ -0.17
LIM2P55344 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
LIM2P55344 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.02□□□□□ -0.17
LIM2P55344 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.02□□□□□ -0.17
LIM2P55344 AC152010.1-201ENST00000415779 2006 ntBASIC14.02□□□□□ -0.17
LIM2P55344 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.02□□□□□ -0.17
LIM2P55344 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
LIM2P55344 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
LIM2P55344 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.01□□□□□ -0.17
LIM2P55344 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.01□□□□□ -0.17
LIM2P55344 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.01□□□□□ -0.17
LIM2P55344 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LIM2P55344 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
LIM2P55344 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
LIM2P55344 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
LIM2P55344 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC14.01□□□□□ -0.17
LIM2P55344 PUDPP3-201ENST00000445368 636 ntBASIC14.01□□□□□ -0.17
LIM2P55344 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.01□□□□□ -0.17
LIM2P55344 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.01□□□□□ -0.17
LIM2P55344 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.01□□□□□ -0.17
LIM2P55344 DUX4L45-201ENST00000566406 1057 ntBASIC14.01□□□□□ -0.17
LIM2P55344 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.01□□□□□ -0.17
LIM2P55344 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
LIM2P55344 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.01□□□□□ -0.17
LIM2P55344 OR2I1P-210ENST00000642037 4691 ntBASIC14.01□□□□□ -0.17
LIM2P55344 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 AGGF1P1-201ENST00000509500 2073 ntBASIC14.01□□□□□ -0.17
LIM2P55344 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 MIR600HG-201ENST00000449175 5984 ntBASIC14.01□□□□□ -0.17
LIM2P55344 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
LIM2P55344 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
LIM2P55344 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.01□□□□□ -0.17
LIM2P55344 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.01□□□□□ -0.17
LIM2P55344 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
LIM2P55344 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14□□□□□ -0.17
LIM2P55344 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
LIM2P55344 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14□□□□□ -0.17
LIM2P55344 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC14□□□□□ -0.17
LIM2P55344 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
LIM2P55344 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
LIM2P55344 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14□□□□□ -0.17
LIM2P55344 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
LIM2P55344 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14□□□□□ -0.17
LIM2P55344 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
LIM2P55344 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
LIM2P55344 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14□□□□□ -0.17
LIM2P55344 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
LIM2P55344 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC14□□□□□ -0.17
LIM2P55344 BNIP3P42-201ENST00000454982 569 ntBASIC14□□□□□ -0.17
LIM2P55344 AC022447.6-201ENST00000515522 438 ntBASIC14□□□□□ -0.17
LIM2P55344 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC14□□□□□ -0.17
LIM2P55344 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14□□□□□ -0.17
LIM2P55344 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC14□□□□□ -0.17
LIM2P55344 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14□□□□□ -0.17
LIM2P55344 BNIP3P29-201ENST00000598302 571 ntBASIC14□□□□□ -0.17
LIM2P55344 AC011447.5-201ENST00000616168 564 ntBASIC14□□□□□ -0.17
LIM2P55344 AP001002.3-201ENST00000623482 206 ntBASIC14□□□□□ -0.17
LIM2P55344 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14□□□□□ -0.17
LIM2P55344 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14□□□□□ -0.17
LIM2P55344 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms