Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC245100.3-201ENST00000441281 285 ntBASIC14.3□□□□□ -0.12
FOXA1P55317 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.3□□□□□ -0.12
FOXA1P55317 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.3□□□□□ -0.12
FOXA1P55317 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.3□□□□□ -0.12
FOXA1P55317 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.3□□□□□ -0.12
FOXA1P55317 AC145423.3-201ENST00000615987 467 ntBASIC14.3□□□□□ -0.12
FOXA1P55317 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
FOXA1P55317 RPSAP52-203ENST00000622976 1023 ntBASIC14.3□□□□□ -0.12
FOXA1P55317 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA1P55317 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA1P55317 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA1P55317 AC023794.5-201ENST00000564380 2157 ntBASIC14.3□□□□□ -0.12
FOXA1P55317 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA1P55317 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
FOXA1P55317 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA1P55317 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.29□□□□□ -0.12
FOXA1P55317 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
FOXA1P55317 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
FOXA1P55317 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA1P55317 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA1P55317 AC111170.3-201ENST00000624282 2464 ntBASIC14.29□□□□□ -0.12
FOXA1P55317 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.29□□□□□ -0.12
FOXA1P55317 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.29□□□□□ -0.12
FOXA1P55317 TMEM198B-204ENST00000484016 896 ntBASIC14.29□□□□□ -0.12
FOXA1P55317 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA1P55317 AC027796.2-201ENST00000575326 344 ntBASIC14.29□□□□□ -0.12
FOXA1P55317 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.29□□□□□ -0.12
FOXA1P55317 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 AC138466.3-201ENST00000619983 221 ntBASIC14.29□□□□□ -0.12
FOXA1P55317 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 AL590440.2-201ENST00000641973 1595 ntBASIC14.29□□□□□ -0.12
FOXA1P55317 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
FOXA1P55317 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
FOXA1P55317 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA1P55317 AC090643.2-201ENST00000623442 2029 ntBASIC14.29□□□□□ -0.12
FOXA1P55317 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA1P55317 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
FOXA1P55317 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
FOXA1P55317 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA1P55317 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 AC236430.1-201ENST00000402231 743 ntBASIC14.28□□□□□ -0.12
FOXA1P55317 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXA1P55317 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXA1P55317 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXA1P55317 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
FOXA1P55317 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms