Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC15.66■□□□□ 0.1
LIG3P49916 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.66■□□□□ 0.1
LIG3P49916 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.66■□□□□ 0.1
LIG3P49916 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 AC004899.2-201ENST00000622993 3860 ntBASIC15.66■□□□□ 0.1
LIG3P49916 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.65■□□□□ 0.1
LIG3P49916 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
LIG3P49916 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
LIG3P49916 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.65■□□□□ 0.1
LIG3P49916 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.65■□□□□ 0.1
LIG3P49916 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 KRT17P7-201ENST00000451704 1104 ntBASIC15.65■□□□□ 0.1
LIG3P49916 INE1-201ENST00000456273 945 ntBASIC15.65■□□□□ 0.1
LIG3P49916 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.65■□□□□ 0.1
LIG3P49916 AC011495.1-201ENST00000498085 584 ntBASIC15.65■□□□□ 0.1
LIG3P49916 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.65■□□□□ 0.1
LIG3P49916 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.65■□□□□ 0.1
LIG3P49916 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.65■□□□□ 0.1
LIG3P49916 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.65■□□□□ 0.1
LIG3P49916 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.65■□□□□ 0.1
LIG3P49916 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
LIG3P49916 CICP16-201ENST00000502609 2813 ntBASIC15.65■□□□□ 0.1
LIG3P49916 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LIG3P49916 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC15.65■□□□□ 0.1
LIG3P49916 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.64■□□□□ 0.1
LIG3P49916 EML1-203ENST00000334192 4064 ntTSL 5 BASIC15.64■□□□□ 0.09
LIG3P49916 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.64■□□□□ 0.09
LIG3P49916 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
LIG3P49916 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC15.64■□□□□ 0.09
LIG3P49916 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC15.64■□□□□ 0.09
LIG3P49916 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
LIG3P49916 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
LIG3P49916 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.64■□□□□ 0.09
LIG3P49916 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
LIG3P49916 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.64■□□□□ 0.09
LIG3P49916 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.64■□□□□ 0.09
LIG3P49916 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.64■□□□□ 0.09
LIG3P49916 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.64■□□□□ 0.09
LIG3P49916 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
LIG3P49916 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.64■□□□□ 0.09
LIG3P49916 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
LIG3P49916 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
LIG3P49916 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
LIG3P49916 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
LIG3P49916 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC15.64■□□□□ 0.09
LIG3P49916 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC15.64■□□□□ 0.09
LIG3P49916 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC15.64■□□□□ 0.09
LIG3P49916 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC15.64■□□□□ 0.09
LIG3P49916 AC015909.5-201ENST00000624336 2266 ntBASIC15.64■□□□□ 0.09
LIG3P49916 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms