Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.98□□□□□ -0.17
SOX3P41225 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 TPM3P8-201ENST00000330554 643 ntBASIC13.98□□□□□ -0.17
SOX3P41225 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
SOX3P41225 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.98□□□□□ -0.17
SOX3P41225 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
SOX3P41225 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
SOX3P41225 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.98□□□□□ -0.17
SOX3P41225 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.98□□□□□ -0.17
SOX3P41225 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.98□□□□□ -0.17
SOX3P41225 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.98□□□□□ -0.17
SOX3P41225 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.98□□□□□ -0.17
SOX3P41225 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.98□□□□□ -0.17
SOX3P41225 RN7SL48P-201ENST00000579283 293 ntBASIC13.98□□□□□ -0.17
SOX3P41225 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.98□□□□□ -0.17
SOX3P41225 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.98□□□□□ -0.17
SOX3P41225 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.98□□□□□ -0.17
SOX3P41225 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.98□□□□□ -0.17
SOX3P41225 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.98□□□□□ -0.17
SOX3P41225 BEND3P1-201ENST00000421591 1944 ntBASIC13.98□□□□□ -0.17
SOX3P41225 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.97□□□□□ -0.17
SOX3P41225 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
SOX3P41225 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.97□□□□□ -0.17
SOX3P41225 AC006001.1-201ENST00000325130 474 ntBASIC13.97□□□□□ -0.17
SOX3P41225 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.97□□□□□ -0.17
SOX3P41225 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.97□□□□□ -0.17
SOX3P41225 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.97□□□□□ -0.17
SOX3P41225 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.97□□□□□ -0.17
SOX3P41225 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.97□□□□□ -0.17
SOX3P41225 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.97□□□□□ -0.17
SOX3P41225 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.97□□□□□ -0.17
SOX3P41225 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.97□□□□□ -0.17
SOX3P41225 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.97□□□□□ -0.17
SOX3P41225 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.97□□□□□ -0.17
SOX3P41225 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.97□□□□□ -0.17
SOX3P41225 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.97□□□□□ -0.17
SOX3P41225 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
SOX3P41225 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.97□□□□□ -0.17
SOX3P41225 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.97□□□□□ -0.17
SOX3P41225 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 ENPP7P14-201ENST00000621765 1040 ntBASIC13.97□□□□□ -0.17
SOX3P41225 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.97□□□□□ -0.17
SOX3P41225 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
SOX3P41225 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.97□□□□□ -0.17
SOX3P41225 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.97□□□□□ -0.17
SOX3P41225 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.97□□□□□ -0.17
SOX3P41225 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.97□□□□□ -0.17
SOX3P41225 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.97□□□□□ -0.17
SOX3P41225 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 AP001267.2-201ENST00000532619 2086 ntBASIC13.97□□□□□ -0.17
SOX3P41225 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
SOX3P41225 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms