Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
CIITAP33076 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
CIITAP33076 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC16.53■□□□□ 0.24
CIITAP33076 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 AC078875.1-201ENST00000431907 724 ntBASIC16.53■□□□□ 0.24
CIITAP33076 XBP1P1-201ENST00000436573 652 ntBASIC16.53■□□□□ 0.24
CIITAP33076 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.53■□□□□ 0.24
CIITAP33076 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.53■□□□□ 0.24
CIITAP33076 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.53■□□□□ 0.24
CIITAP33076 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC16.53■□□□□ 0.24
CIITAP33076 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.53■□□□□ 0.24
CIITAP33076 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.53■□□□□ 0.24
CIITAP33076 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CIITAP33076 AC103810.3-201ENST00000583567 96 ntBASIC16.53■□□□□ 0.24
CIITAP33076 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.53■□□□□ 0.24
CIITAP33076 AC138649.2-201ENST00000615886 705 ntBASIC16.53■□□□□ 0.24
CIITAP33076 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.53■□□□□ 0.24
CIITAP33076 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CIITAP33076 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CIITAP33076 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.53■□□□□ 0.24
CIITAP33076 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.53■□□□□ 0.24
CIITAP33076 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
CIITAP33076 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
CIITAP33076 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.52■□□□□ 0.24
CIITAP33076 AC090505.1-201ENST00000430515 1834 ntBASIC16.52■□□□□ 0.24
CIITAP33076 TUBBP5-203ENST00000508529 1334 ntBASIC16.52■□□□□ 0.24
CIITAP33076 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.52■□□□□ 0.24
CIITAP33076 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.52■□□□□ 0.24
CIITAP33076 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CIITAP33076 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
CIITAP33076 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC16.52■□□□□ 0.24
CIITAP33076 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.52■□□□□ 0.24
CIITAP33076 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC16.52■□□□□ 0.24
CIITAP33076 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC16.52■□□□□ 0.24
CIITAP33076 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.52■□□□□ 0.24
CIITAP33076 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC16.52■□□□□ 0.24
CIITAP33076 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.52■□□□□ 0.24
CIITAP33076 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.52■□□□□ 0.24
CIITAP33076 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CIITAP33076 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CIITAP33076 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CIITAP33076 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CIITAP33076 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
CIITAP33076 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.52■□□□□ 0.23
CIITAP33076 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CIITAP33076 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CIITAP33076 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CIITAP33076 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CIITAP33076 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.23
CIITAP33076 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.52■□□□□ 0.23
CIITAP33076 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CIITAP33076 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CIITAP33076 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.51■□□□□ 0.23
CIITAP33076 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CIITAP33076 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.51■□□□□ 0.23
CIITAP33076 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.51■□□□□ 0.23
CIITAP33076 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CIITAP33076 SDCCAG3P2-201ENST00000326105 1023 ntBASIC16.51■□□□□ 0.23
CIITAP33076 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CIITAP33076 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CIITAP33076 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC16.51■□□□□ 0.23
CIITAP33076 FNTAP2-201ENST00000430308 634 ntBASIC16.51■□□□□ 0.23
CIITAP33076 AL161932.2-201ENST00000435436 679 ntBASIC16.51■□□□□ 0.23
CIITAP33076 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms