Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC12.11□□□□□ -0.47
SSSCA1O60232 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 AC009078.2-202ENST00000463353 338 ntBASIC12.11□□□□□ -0.47
SSSCA1O60232 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC12.11□□□□□ -0.47
SSSCA1O60232 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC12.11□□□□□ -0.47
SSSCA1O60232 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC12.11□□□□□ -0.47
SSSCA1O60232 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC12.11□□□□□ -0.47
SSSCA1O60232 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.11□□□□□ -0.47
SSSCA1O60232 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC12.11□□□□□ -0.47
SSSCA1O60232 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC12.11□□□□□ -0.47
SSSCA1O60232 AL033527.5-202ENST00000641632 1098 ntBASIC12.11□□□□□ -0.47
SSSCA1O60232 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC12.11□□□□□ -0.47
SSSCA1O60232 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC12.11□□□□□ -0.47
SSSCA1O60232 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC12.11□□□□□ -0.47
SSSCA1O60232 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
SSSCA1O60232 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC12.11□□□□□ -0.47
SSSCA1O60232 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC12.1□□□□□ -0.47
SSSCA1O60232 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC12.1□□□□□ -0.47
SSSCA1O60232 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC12.1□□□□□ -0.47
SSSCA1O60232 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC12.1□□□□□ -0.47
SSSCA1O60232 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
SSSCA1O60232 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC12.1□□□□□ -0.47
SSSCA1O60232 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC12.1□□□□□ -0.47
SSSCA1O60232 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC12.1□□□□□ -0.47
SSSCA1O60232 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC12.1□□□□□ -0.47
SSSCA1O60232 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 AC004945.1-201ENST00000416738 983 ntBASIC12.1□□□□□ -0.47
SSSCA1O60232 AL080243.2-201ENST00000418783 582 ntBASIC12.1□□□□□ -0.47
SSSCA1O60232 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC12.1□□□□□ -0.47
SSSCA1O60232 HLA-K-203ENST00000430151 1046 ntBASIC12.1□□□□□ -0.47
SSSCA1O60232 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC12.1□□□□□ -0.47
SSSCA1O60232 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12.1□□□□□ -0.47
SSSCA1O60232 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC12.1□□□□□ -0.47
SSSCA1O60232 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
SSSCA1O60232 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC12.1□□□□□ -0.47
SSSCA1O60232 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC12.1□□□□□ -0.47
SSSCA1O60232 FAM197Y3-203ENST00000618346 717 ntBASIC12.1□□□□□ -0.47
SSSCA1O60232 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 CETN4P-206ENST00000642099 2168 ntBASIC12.1□□□□□ -0.47
SSSCA1O60232 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC12.1□□□□□ -0.47
SSSCA1O60232 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC12.1□□□□□ -0.47
SSSCA1O60232 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
SSSCA1O60232 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SSSCA1O60232 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms