Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 AP003398.1-201ENST00000531124 318 ntBASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 AC006158.1-201ENST00000610661 249 ntBASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 AC002472.4-201ENST00000641915 272 ntBASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 MRPL37P1-201ENST00000592451 1337 ntBASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
SHROOM4Q9ULL8 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 AJ011931.1-201ENST00000618749 2492 ntBASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 RPS23-204ENST00000507980 836 ntTSL 2 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 FAM86KP-201ENST00000509817 987 ntBASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM4Q9ULL8 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 USP4-203ENST00000415188 1454 ntTSL 3 BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 AL357373.1-201ENST00000394974 322 ntBASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 GUSBP10-201ENST00000417412 665 ntBASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM4Q9ULL8 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 AC244197.1-201ENST00000456494 951 ntBASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 AC084752.1-201ENST00000509766 622 ntBASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 AC007326.1-201ENST00000604539 458 ntBASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
SHROOM4Q9ULL8 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
SHROOM4Q9ULL8 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.01
SHROOM4Q9ULL8 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
SHROOM4Q9ULL8 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
SHROOM4Q9ULL8 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC27.64■■■□□ 2.01
SHROOM4Q9ULL8 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms