Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.8□□□□□ -0.04
LHX3Q9UBR4 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LHX3Q9UBR4 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LHX3Q9UBR4 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.8□□□□□ -0.04
LHX3Q9UBR4 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LHX3Q9UBR4 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LHX3Q9UBR4 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
LHX3Q9UBR4 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.8□□□□□ -0.04
LHX3Q9UBR4 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
LHX3Q9UBR4 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LHX3Q9UBR4 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LHX3Q9UBR4 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 KRT18P36-201ENST00000411618 1276 ntBASIC14.79□□□□□ -0.04
LHX3Q9UBR4 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 SNORD3B-2-202ENST00000571722 791 ntBASIC14.79□□□□□ -0.04
LHX3Q9UBR4 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.79□□□□□ -0.04
LHX3Q9UBR4 MIR6787-201ENST00000616675 61 ntBASIC14.79□□□□□ -0.04
LHX3Q9UBR4 AC133540.1-201ENST00000620845 1019 ntBASIC14.79□□□□□ -0.04
LHX3Q9UBR4 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.79□□□□□ -0.04
LHX3Q9UBR4 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 AC005912.2-201ENST00000619492 2400 ntBASIC14.78□□□□□ -0.04
LHX3Q9UBR4 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 AC016700.1-201ENST00000429424 312 ntBASIC14.78□□□□□ -0.04
LHX3Q9UBR4 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 FADS2-212ENST00000522639 360 ntTSL 5 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 FADS2-215ENST00000574708 385 ntTSL 3 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 DDX5-235ENST00000630471 473 ntTSL 4 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 BX640514.1-201ENST00000583223 1918 ntBASIC14.78□□□□□ -0.04
LHX3Q9UBR4 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 RN7SL832P-201ENST00000607781 1756 ntBASIC14.78□□□□□ -0.04
LHX3Q9UBR4 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LHX3Q9UBR4 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.77□□□□□ -0.04
LHX3Q9UBR4 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
LHX3Q9UBR4 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
LHX3Q9UBR4 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LHX3Q9UBR4 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LHX3Q9UBR4 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LHX3Q9UBR4 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms