Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MKS1Q9NXB0 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
MKS1Q9NXB0 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MKS1Q9NXB0 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
MKS1Q9NXB0 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
MKS1Q9NXB0 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
MKS1Q9NXB0 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
MKS1Q9NXB0 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
MKS1Q9NXB0 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
MKS1Q9NXB0 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.58□□□□□ -0.08
MKS1Q9NXB0 SOCS2P1-201ENST00000417727 557 ntBASIC14.58□□□□□ -0.08
MKS1Q9NXB0 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 MESTP3-201ENST00000503460 968 ntBASIC14.58□□□□□ -0.08
MKS1Q9NXB0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 KRT18P8-201ENST00000581937 1246 ntBASIC14.58□□□□□ -0.08
MKS1Q9NXB0 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.58□□□□□ -0.08
MKS1Q9NXB0 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.58□□□□□ -0.08
MKS1Q9NXB0 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.58□□□□□ -0.08
MKS1Q9NXB0 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.58□□□□□ -0.08
MKS1Q9NXB0 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 AC114271.1-201ENST00000612689 2813 ntBASIC14.58□□□□□ -0.08
MKS1Q9NXB0 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MKS1Q9NXB0 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 IGHV3-42-201ENST00000520410 361 ntBASIC14.57□□□□□ -0.08
MKS1Q9NXB0 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 BAP1-211ENST00000615113 489 ntBASIC14.57□□□□□ -0.08
MKS1Q9NXB0 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 DCAF4-203ENST00000394234 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 AC107918.4-201ENST00000641966 3141 ntBASIC14.57□□□□□ -0.08
MKS1Q9NXB0 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
MKS1Q9NXB0 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MKS1Q9NXB0 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 156.4 ms