Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
MMP28Q9H239 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 GPS2P2-201ENST00000430745 888 ntBASIC13.15□□□□□ -0.3
MMP28Q9H239 SPDYE14P-201ENST00000442619 822 ntBASIC13.15□□□□□ -0.3
MMP28Q9H239 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC13.15□□□□□ -0.3
MMP28Q9H239 AL139010.1-201ENST00000454878 894 ntBASIC13.15□□□□□ -0.3
MMP28Q9H239 HLA-J-203ENST00000494367 1087 ntBASIC13.15□□□□□ -0.3
MMP28Q9H239 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 RPL28-205ENST00000558131 444 ntTSL 5 BASIC13.15□□□□□ -0.3
MMP28Q9H239 SPCS2P1-201ENST00000561636 679 ntBASIC13.15□□□□□ -0.3
MMP28Q9H239 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC13.15□□□□□ -0.3
MMP28Q9H239 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC13.15□□□□□ -0.3
MMP28Q9H239 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.15□□□□□ -0.3
MMP28Q9H239 AC018529.1-201ENST00000613063 361 ntBASIC13.15□□□□□ -0.3
MMP28Q9H239 LINC00628-201ENST00000628516 1289 ntBASIC13.15□□□□□ -0.3
MMP28Q9H239 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
MMP28Q9H239 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC13.15□□□□□ -0.3
MMP28Q9H239 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 AC090505.1-201ENST00000430515 1834 ntBASIC13.15□□□□□ -0.3
MMP28Q9H239 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
MMP28Q9H239 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
MMP28Q9H239 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC13.15□□□□□ -0.31
MMP28Q9H239 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.31
MMP28Q9H239 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.15□□□□□ -0.31
MMP28Q9H239 MEX3B-202ENST00000558133 4333 ntBASIC13.15□□□□□ -0.31
MMP28Q9H239 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC13.14□□□□□ -0.31
MMP28Q9H239 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC13.14□□□□□ -0.31
MMP28Q9H239 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
MMP28Q9H239 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.14□□□□□ -0.31
MMP28Q9H239 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
MMP28Q9H239 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
MMP28Q9H239 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC13.14□□□□□ -0.31
MMP28Q9H239 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
MMP28Q9H239 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 CALY-203ENST00000368558 825 ntTSL 5 BASIC13.14□□□□□ -0.31
MMP28Q9H239 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
MMP28Q9H239 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
MMP28Q9H239 CD81-202ENST00000381036 880 ntTSL 3 BASIC13.14□□□□□ -0.31
MMP28Q9H239 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 SPDYE7P-202ENST00000420373 878 ntBASIC13.14□□□□□ -0.31
MMP28Q9H239 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC13.14□□□□□ -0.31
MMP28Q9H239 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC13.14□□□□□ -0.31
MMP28Q9H239 AC026150.2-201ENST00000564693 1156 ntBASIC13.14□□□□□ -0.31
MMP28Q9H239 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 AP001059.3-201ENST00000619053 235 ntBASIC13.14□□□□□ -0.31
MMP28Q9H239 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.14□□□□□ -0.31
MMP28Q9H239 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
MMP28Q9H239 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC13.14□□□□□ -0.31
MMP28Q9H239 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
MMP28Q9H239 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC13.14□□□□□ -0.31
MMP28Q9H239 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.14□□□□□ -0.31
MMP28Q9H239 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC13.14□□□□□ -0.31
MMP28Q9H239 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.14□□□□□ -0.31
MMP28Q9H239 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
MMP28Q9H239 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms