Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 AC010141.1-201ENST00000411585 623 ntBASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 AC012618.1-201ENST00000461223 412 ntBASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 MARK2P5-201ENST00000507649 634 ntBASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 AC134698.3-201ENST00000523880 214 ntBASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 RN7SL574P-201ENST00000581512 297 ntBASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 AC046158.3-201ENST00000624947 2558 ntBASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC3Q9BQI4 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 AC091046.1-201ENST00000331871 207 ntBASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 RN7SKP230-201ENST00000365642 335 ntBASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 RPL18P13-201ENST00000478088 569 ntBASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 AC125604.1-201ENST00000496255 707 ntBASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 AL161670.2-201ENST00000557650 1227 ntBASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 209.5 ms