Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RPRD1AQ96P16 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RPRD1AQ96P16 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 CICP12-201ENST00000455801 843 ntBASIC15.23■□□□□ 0.03
RPRD1AQ96P16 AC021723.1-201ENST00000486306 515 ntBASIC15.23■□□□□ 0.03
RPRD1AQ96P16 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 AC100827.2-201ENST00000563214 1194 ntBASIC15.23■□□□□ 0.03
RPRD1AQ96P16 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 AL118558.3-201ENST00000607414 1079 ntBASIC15.23■□□□□ 0.03
RPRD1AQ96P16 AC027601.3-201ENST00000622907 509 ntBASIC15.23■□□□□ 0.03
RPRD1AQ96P16 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 AC068418.2-201ENST00000577309 3703 ntBASIC15.23■□□□□ 0.03
RPRD1AQ96P16 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RPRD1AQ96P16 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 AL365209.1-201ENST00000624418 6473 ntBASIC15.22■□□□□ 0.03
RPRD1AQ96P16 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 POM121L10P-201ENST00000436994 1285 ntBASIC15.22■□□□□ 0.03
RPRD1AQ96P16 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 AL035414.1-201ENST00000451327 857 ntBASIC15.22■□□□□ 0.03
RPRD1AQ96P16 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 AC005730.2-201ENST00000564549 1184 ntBASIC15.22■□□□□ 0.03
RPRD1AQ96P16 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 AC132192.2-201ENST00000596206 1147 ntBASIC15.22■□□□□ 0.03
RPRD1AQ96P16 AC009955.4-201ENST00000597192 544 ntBASIC15.22■□□□□ 0.03
RPRD1AQ96P16 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 MIR6869-201ENST00000619434 62 ntBASIC15.22■□□□□ 0.03
RPRD1AQ96P16 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 AC106881.1-201ENST00000605849 3329 ntBASIC15.22■□□□□ 0.03
RPRD1AQ96P16 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RPRD1AQ96P16 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPRD1AQ96P16 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RPRD1AQ96P16 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms