Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 AC073210.1-201ENST00000414799 232 ntBASIC14.54□□□□□ -0.08
TTC28Q96AY4 RNA5SP288-201ENST00000516075 93 ntBASIC14.54□□□□□ -0.08
TTC28Q96AY4 NDUFB10P1-201ENST00000567319 521 ntBASIC14.54□□□□□ -0.08
TTC28Q96AY4 AL133467.4-201ENST00000602953 725 ntBASIC14.54□□□□□ -0.08
TTC28Q96AY4 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 LILRP2-202ENST00000413572 1383 ntBASIC14.54□□□□□ -0.08
TTC28Q96AY4 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 CICP13-201ENST00000422015 2789 ntBASIC14.54□□□□□ -0.08
TTC28Q96AY4 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 PHBP10-201ENST00000416467 784 ntBASIC14.54□□□□□ -0.08
TTC28Q96AY4 RN7SL684P-201ENST00000465665 294 ntBASIC14.54□□□□□ -0.08
TTC28Q96AY4 SELENOK-205ENST00000541726 814 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 BATF-202ENST00000555504 361 ntTSL 2 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.54□□□□□ -0.08
TTC28Q96AY4 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TTC28Q96AY4 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 FAM25E-201ENST00000411791 322 ntTSL 3 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 SRP9P1-201ENST00000445874 261 ntBASIC14.53□□□□□ -0.08
TTC28Q96AY4 HNRNPA1P73-201ENST00000446472 928 ntBASIC14.53□□□□□ -0.08
TTC28Q96AY4 GYG1-209ENST00000483267 801 ntTSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 TROAP-209ENST00000549275 348 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 TROAP-210ENST00000549534 839 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 AC032044.1-201ENST00000570924 570 ntTSL 4 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 AC103702.1-201ENST00000548801 2630 ntBASIC14.53□□□□□ -0.08
TTC28Q96AY4 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 OR6D1P-203ENST00000641209 4860 ntBASIC14.53□□□□□ -0.08
TTC28Q96AY4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC14.53□□□□□ -0.08
TTC28Q96AY4 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TTC28Q96AY4 AC090386.2-201ENST00000623010 1039 ntBASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms