Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 AC130686.1-201ENST00000622936 2466 ntBASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 LSS-211ENST00000522411 2523 ntTSL 2 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 CYMP-203ENST00000474680 1263 ntBASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 CTBP2P3-201ENST00000585629 1255 ntBASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 TMEM261P1-201ENST00000604899 340 ntBASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 AC006538.3-201ENST00000612495 578 ntBASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 AC011840.2-201ENST00000563063 1520 ntBASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 KRT8P35-201ENST00000483942 1338 ntBASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 HSPA8P5-201ENST00000456928 2069 ntBASIC15.36■□□□□ 0.05
ATG4AQ8WYN0 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 MSTO2P-201ENST00000314835 1709 ntBASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 MIR661-201ENST00000384842 89 ntBASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 PMS2P2-201ENST00000425039 1128 ntBASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 AC092183.1-201ENST00000469884 875 ntBASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 RNA5SP421-201ENST00000516864 134 ntBASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ATG4AQ8WYN0 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC15.34■□□□□ 0.05
ATG4AQ8WYN0 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms