Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 CLUHP2-201ENST00000426660 1303 ntBASIC13.15□□□□□ -0.3
SKA3Q8IX90 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 SALL4P5-201ENST00000419001 1760 ntBASIC13.15□□□□□ -0.3
SKA3Q8IX90 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 PTENP1-202ENST00000532280 3996 ntBASIC13.15□□□□□ -0.3
SKA3Q8IX90 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 FAM197Y7-201ENST00000432892 766 ntBASIC13.15□□□□□ -0.3
SKA3Q8IX90 AC007969.1-201ENST00000433675 447 ntBASIC13.15□□□□□ -0.3
SKA3Q8IX90 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 AL590640.2-201ENST00000457038 527 ntBASIC13.15□□□□□ -0.3
SKA3Q8IX90 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 RNA5SP486-201ENST00000515961 83 ntBASIC13.15□□□□□ -0.3
SKA3Q8IX90 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 KRT17P8-201ENST00000540749 863 ntBASIC13.15□□□□□ -0.3
SKA3Q8IX90 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 AC106886.1-201ENST00000568660 600 ntBASIC13.15□□□□□ -0.3
SKA3Q8IX90 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 ECM1P1-201ENST00000604092 1279 ntBASIC13.15□□□□□ -0.3
SKA3Q8IX90 AL162274.1-201ENST00000617191 1098 ntBASIC13.15□□□□□ -0.3
SKA3Q8IX90 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SKA3Q8IX90 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SKA3Q8IX90 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms