Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 HECTD4-202ENST00000377560 15759 ntAPPRIS P5 TSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 USP30-201ENST00000257548 3742 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 MAN2C1-201ENST00000267978 3284 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 FILIP1L-203ENST00000383694 3280 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 MYT1-203ENST00000536311 5614 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 KCNMA1-241ENST00000638606 3852 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 KCNMA1-279ENST00000640182 3852 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 GPC3-201ENST00000370818 2568 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 GRPEL2-201ENST00000329271 4089 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 PAPLN-208ENST00000555445 4282 ntAPPRIS ALT2 TSL 2 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 SMG6-201ENST00000263073 5960 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 CD99L2-203ENST00000370377 3604 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 RNF10-201ENST00000325954 3825 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 GPX1P2-201ENST00000429271 606 ntBASIC9.12□□□□□ -0.95
LINC00643Q86TS7 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 HMGN1P19-201ENST00000436976 333 ntBASIC9.12□□□□□ -0.95
LINC00643Q86TS7 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 AC034232.1-201ENST00000506026 1064 ntBASIC9.12□□□□□ -0.95
LINC00643Q86TS7 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 LY6E-205ENST00000519611 635 ntTSL 3 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 NEK4P2-201ENST00000580004 1012 ntBASIC9.12□□□□□ -0.95
LINC00643Q86TS7 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 AL136038.4-201ENST00000603606 1261 ntBASIC9.12□□□□□ -0.95
LINC00643Q86TS7 AL450472.2-201ENST00000603663 1156 ntBASIC9.12□□□□□ -0.95
LINC00643Q86TS7 AC091076.1-201ENST00000610741 619 ntBASIC9.12□□□□□ -0.95
LINC00643Q86TS7 WT1-AS_2.1-201ENST00000613208 137 ntBASIC9.12□□□□□ -0.95
LINC00643Q86TS7 AL023973.1-201ENST00000624619 620 ntBASIC9.12□□□□□ -0.95
LINC00643Q86TS7 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 AC023355.1-202ENST00000612262 4242 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ALDH4A1-202ENST00000375341 3363 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 DDB2-201ENST00000256996 1870 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 RGS3-207ENST00000374140 4591 ntAPPRIS P1 TSL 2 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 SCN5A-202ENST00000333535 8456 ntAPPRIS P5 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 LIG1-221ENST00000613670 3949 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 CARS-201ENST00000278224 2491 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ACVRL1-206ENST00000550683 4121 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 SLC44A3-AS1-215ENST00000634870 5956 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 TK2-206ENST00000527800 2687 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 CDC42BPA-203ENST00000366766 10610 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 AC148477.5-201ENST00000625164 1645 ntBASIC9.12□□□□□ -0.95
LINC00643Q86TS7 LIMCH1-208ENST00000508501 5054 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 LIMCH1-217ENST00000512946 5057 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 HECW1-IT1-201ENST00000322220 1839 ntTSL 2 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 LINC00642-201ENST00000419459 2026 ntTSL 2 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 REPS1-205ENST00000415951 2424 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ELMO1-201ENST00000310758 4022 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 ACIN1-222ENST00000557515 2751 ntTSL 5 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 PIGM-201ENST00000368090 4319 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
LINC00643Q86TS7 RGPD5-203ENST00000393283 3304 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 SLC26A6-203ENST00000358747 2729 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 TRPC4-206ENST00000379705 4059 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 PLAU-201ENST00000372764 2321 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 POLR3E-219ENST00000615879 3655 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 PTCH1-207ENST00000429896 6563 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 DNAH10OS-201ENST00000514254 5040 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 ZNF473-205ENST00000595661 4828 ntAPPRIS P3 TSL 5 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 PRTFDC1-201ENST00000320152 1944 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 AC015818.9-201ENST00000591705 4582 ntBASIC9.11□□□□□ -0.95
LINC00643Q86TS7 TMEM56-201ENST00000370203 6822 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 PIGG-208ENST00000504346 3019 ntTSL 2 BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 CDKN2B-201ENST00000276925 3911 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 RBPJ-203ENST00000345843 1682 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
LINC00643Q86TS7 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms