Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 AL353637.1-201ENST00000451571 732 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 TMEM198B-204ENST00000484016 896 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 RBM8B-201ENST00000555532 525 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 RN7SL371P-201ENST00000578099 267 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 MIR4722-201ENST00000578292 60 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 IRF3-215ENST00000596822 823 ntTSL 3 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 AC133540.1-201ENST00000620845 1019 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 AC006453.1-201ENST00000636037 1257 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 KRT8P28-201ENST00000433288 1390 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 AL590440.2-201ENST00000641973 1595 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 AC092135.3-201ENST00000624151 1846 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 AC006504.5-208ENST00000588784 2401 ntBASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
RNFT1Q5M7Z0 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 MAGEA5-201ENST00000446757 942 ntBASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 IGLV3-15-201ENST00000518356 244 ntBASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 AC092299.1-201ENST00000632679 757 ntBASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNFT1Q5M7Z0 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 AC018629.1-201ENST00000623381 1736 ntBASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNFT1Q5M7Z0 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms