Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CDH6P55285 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.41■□□□□ 0.06
CDH6P55285 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CDH6P55285 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.41■□□□□ 0.06
CDH6P55285 FTH1P14-201ENST00000482930 551 ntBASIC15.41■□□□□ 0.06
CDH6P55285 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.41■□□□□ 0.06
CDH6P55285 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.41■□□□□ 0.06
CDH6P55285 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CDH6P55285 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.41■□□□□ 0.06
CDH6P55285 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CDH6P55285 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.41■□□□□ 0.06
CDH6P55285 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CDH6P55285 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH6P55285 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.41■□□□□ 0.06
CDH6P55285 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.4■□□□□ 0.06
CDH6P55285 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 AC009093.2-202ENST00000620513 2079 ntBASIC15.4■□□□□ 0.06
CDH6P55285 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
CDH6P55285 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.4■□□□□ 0.06
CDH6P55285 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CDH6P55285 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CDH6P55285 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CDH6P55285 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.4■□□□□ 0.06
CDH6P55285 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.4■□□□□ 0.06
CDH6P55285 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.4■□□□□ 0.06
CDH6P55285 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 RNA5SP486-201ENST00000515961 83 ntBASIC15.4■□□□□ 0.06
CDH6P55285 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.4■□□□□ 0.06
CDH6P55285 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.4■□□□□ 0.06
CDH6P55285 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.4■□□□□ 0.06
CDH6P55285 AC106820.3-201ENST00000561653 397 ntBASIC15.4■□□□□ 0.06
CDH6P55285 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.4■□□□□ 0.06
CDH6P55285 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CDH6P55285 BTNL10-201ENST00000595971 695 ntBASIC15.4■□□□□ 0.06
CDH6P55285 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CDH6P55285 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.4■□□□□ 0.06
CDH6P55285 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CDH6P55285 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 AP000593.2-201ENST00000542775 1433 ntBASIC15.4■□□□□ 0.06
CDH6P55285 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.4■□□□□ 0.06
CDH6P55285 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.4■□□□□ 0.06
CDH6P55285 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.4■□□□□ 0.06
CDH6P55285 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.4■□□□□ 0.06
CDH6P55285 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH6P55285 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.39■□□□□ 0.06
CDH6P55285 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.39■□□□□ 0.05
CDH6P55285 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.39■□□□□ 0.05
CDH6P55285 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 FAM197Y7-201ENST00000432892 766 ntBASIC15.39■□□□□ 0.05
CDH6P55285 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDH6P55285 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.39■□□□□ 0.05
CDH6P55285 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms