Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.28■□□□□ 0.36
BRCA1P38398 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.28■□□□□ 0.36
BRCA1P38398 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC17.28■□□□□ 0.36
BRCA1P38398 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.28■□□□□ 0.36
BRCA1P38398 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
BRCA1P38398 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.28■□□□□ 0.36
BRCA1P38398 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
BRCA1P38398 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BRCA1P38398 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.27■□□□□ 0.36
BRCA1P38398 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BRCA1P38398 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
BRCA1P38398 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
BRCA1P38398 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC17.27■□□□□ 0.36
BRCA1P38398 PHBP10-201ENST00000416467 784 ntBASIC17.27■□□□□ 0.36
BRCA1P38398 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC17.27■□□□□ 0.36
BRCA1P38398 GULOP-201ENST00000454030 748 ntBASIC17.27■□□□□ 0.36
BRCA1P38398 RPSAP70-201ENST00000504462 864 ntBASIC17.27■□□□□ 0.36
BRCA1P38398 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
BRCA1P38398 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC17.27■□□□□ 0.36
BRCA1P38398 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC17.27■□□□□ 0.36
BRCA1P38398 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC17.27■□□□□ 0.36
BRCA1P38398 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
BRCA1P38398 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.27■□□□□ 0.36
BRCA1P38398 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.27■□□□□ 0.36
BRCA1P38398 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BRCA1P38398 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BRCA1P38398 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BRCA1P38398 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
BRCA1P38398 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC17.27■□□□□ 0.35
BRCA1P38398 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
BRCA1P38398 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.27■□□□□ 0.35
BRCA1P38398 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
BRCA1P38398 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.27■□□□□ 0.35
BRCA1P38398 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.27■□□□□ 0.35
BRCA1P38398 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC17.27■□□□□ 0.35
BRCA1P38398 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
BRCA1P38398 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
BRCA1P38398 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
BRCA1P38398 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
BRCA1P38398 AC254633.1-201ENST00000606790 345 ntBASIC17.27■□□□□ 0.35
BRCA1P38398 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC17.27■□□□□ 0.35
BRCA1P38398 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
BRCA1P38398 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC17.26■□□□□ 0.35
BRCA1P38398 AC015909.5-201ENST00000624336 2266 ntBASIC17.26■□□□□ 0.35
BRCA1P38398 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BRCA1P38398 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.26■□□□□ 0.35
BRCA1P38398 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
BRCA1P38398 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BRCA1P38398 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BRCA1P38398 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BRCA1P38398 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BRCA1P38398 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.26■□□□□ 0.35
BRCA1P38398 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.26■□□□□ 0.35
BRCA1P38398 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
BRCA1P38398 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BRCA1P38398 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BRCA1P38398 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC17.26■□□□□ 0.35
BRCA1P38398 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC17.26■□□□□ 0.35
BRCA1P38398 AC092810.2-201ENST00000431570 362 ntBASIC17.26■□□□□ 0.35
BRCA1P38398 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC17.26■□□□□ 0.35
BRCA1P38398 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC17.26■□□□□ 0.35
BRCA1P38398 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC17.26■□□□□ 0.35
BRCA1P38398 ABCC6P1-203ENST00000565566 1170 ntBASIC17.26■□□□□ 0.35
BRCA1P38398 EMP3-204ENST00000596315 761 ntTSL 2 BASIC17.26■□□□□ 0.35
BRCA1P38398 AC087072.1-201ENST00000603727 421 ntBASIC17.26■□□□□ 0.35
BRCA1P38398 AL450487.2-201ENST00000615934 407 ntBASIC17.26■□□□□ 0.35
BRCA1P38398 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC17.26■□□□□ 0.35
BRCA1P38398 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BRCA1P38398 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BRCA1P38398 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
BRCA1P38398 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BRCA1P38398 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
BRCA1P38398 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.26■□□□□ 0.35
BRCA1P38398 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.26■□□□□ 0.35
BRCA1P38398 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC17.25■□□□□ 0.35
BRCA1P38398 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
BRCA1P38398 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC17.25■□□□□ 0.35
BRCA1P38398 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
BRCA1P38398 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC17.25■□□□□ 0.35
BRCA1P38398 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC17.25■□□□□ 0.35
BRCA1P38398 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC17.25■□□□□ 0.35
BRCA1P38398 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
BRCA1P38398 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC17.25■□□□□ 0.35
BRCA1P38398 AC026412.1-206ENST00000502273 206 ntBASIC17.25■□□□□ 0.35
BRCA1P38398 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC17.25■□□□□ 0.35
BRCA1P38398 PRR20FP-201ENST00000603320 180 ntBASIC17.25■□□□□ 0.35
BRCA1P38398 AC005865.2-202ENST00000635814 725 ntBASIC17.25■□□□□ 0.35
BRCA1P38398 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.25■□□□□ 0.35
BRCA1P38398 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRCA1P38398 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.25■□□□□ 0.35
BRCA1P38398 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms