Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.55■□□□□ 0.08
BDNFP23560 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 AC139712.1-201ENST00000378256 1875 ntBASIC15.55■□□□□ 0.08
BDNFP23560 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC15.55■□□□□ 0.08
BDNFP23560 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 AL590440.2-201ENST00000641973 1595 ntBASIC15.55■□□□□ 0.08
BDNFP23560 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.55■□□□□ 0.08
BDNFP23560 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
BDNFP23560 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.55■□□□□ 0.08
BDNFP23560 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.55■□□□□ 0.08
BDNFP23560 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC15.55■□□□□ 0.08
BDNFP23560 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.55■□□□□ 0.08
BDNFP23560 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC15.55■□□□□ 0.08
BDNFP23560 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC15.55■□□□□ 0.08
BDNFP23560 AC013355.1-201ENST00000562625 723 ntBASIC15.55■□□□□ 0.08
BDNFP23560 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC15.55■□□□□ 0.08
BDNFP23560 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.55■□□□□ 0.08
BDNFP23560 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.55■□□□□ 0.08
BDNFP23560 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
BDNFP23560 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 AC136759.1-202ENST00000530858 2194 ntBASIC15.55■□□□□ 0.08
BDNFP23560 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
BDNFP23560 MYO15B-237ENST00000642007 4893 ntBASIC15.55■□□□□ 0.08
BDNFP23560 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.55■□□□□ 0.08
BDNFP23560 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BDNFP23560 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 AC015688.4-201ENST00000580780 1647 ntBASIC15.54■□□□□ 0.08
BDNFP23560 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
BDNFP23560 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.54■□□□□ 0.08
BDNFP23560 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
BDNFP23560 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 CRCP-204ENST00000398684 492 ntTSL 2 BASIC15.54■□□□□ 0.08
BDNFP23560 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.54■□□□□ 0.08
BDNFP23560 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.54■□□□□ 0.08
BDNFP23560 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.54■□□□□ 0.08
BDNFP23560 VDAC1P1-201ENST00000439229 848 ntBASIC15.54■□□□□ 0.08
BDNFP23560 AL645933.1-201ENST00000440087 609 ntBASIC15.54■□□□□ 0.08
BDNFP23560 AC005077.2-201ENST00000449786 690 ntBASIC15.54■□□□□ 0.08
BDNFP23560 REEP1-202ENST00000453231 940 ntTSL 2 BASIC15.54■□□□□ 0.08
BDNFP23560 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
BDNFP23560 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.54■□□□□ 0.08
BDNFP23560 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.54■□□□□ 0.08
BDNFP23560 SCARNA21-201ENST00000517026 139 ntBASIC15.54■□□□□ 0.08
BDNFP23560 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.54■□□□□ 0.08
BDNFP23560 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 AL160314.3-201ENST00000556041 767 ntBASIC15.54■□□□□ 0.08
BDNFP23560 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.54■□□□□ 0.08
BDNFP23560 CSH2-206ENST00000560142 749 ntTSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 AC103988.2-201ENST00000561804 725 ntBASIC15.54■□□□□ 0.08
BDNFP23560 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
BDNFP23560 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.54■□□□□ 0.08
BDNFP23560 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.54■□□□□ 0.08
BDNFP23560 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.54■□□□□ 0.08
BDNFP23560 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
BDNFP23560 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.54■□□□□ 0.08
BDNFP23560 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms