Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC14.84□□□□□ -0.03
VCANP13611 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
VCANP13611 RBM14-205ENST00000443702 732 ntTSL 3 BASIC14.84□□□□□ -0.03
VCANP13611 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 MIR1587-201ENST00000583319 53 ntBASIC14.84□□□□□ -0.03
VCANP13611 CICP23-201ENST00000605013 2741 ntBASIC14.84□□□□□ -0.03
VCANP13611 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC14.84□□□□□ -0.03
VCANP13611 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
VCANP13611 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.83□□□□□ -0.03
VCANP13611 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.03
VCANP13611 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VCANP13611 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VCANP13611 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC14.83□□□□□ -0.04
VCANP13611 MORN2-205ENST00000410014 750 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
VCANP13611 CA5BP1-205ENST00000435806 1064 ntBASIC14.83□□□□□ -0.04
VCANP13611 MARK2P17-201ENST00000498560 841 ntBASIC14.83□□□□□ -0.04
VCANP13611 AC099328.1-201ENST00000498809 1030 ntBASIC14.83□□□□□ -0.04
VCANP13611 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
VCANP13611 MIR6165-201ENST00000614803 84 ntBASIC14.83□□□□□ -0.04
VCANP13611 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.83□□□□□ -0.04
VCANP13611 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VCANP13611 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VCANP13611 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VCANP13611 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC14.83□□□□□ -0.04
VCANP13611 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
VCANP13611 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
VCANP13611 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.83□□□□□ -0.04
VCANP13611 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VCANP13611 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC14.83□□□□□ -0.04
VCANP13611 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC14.83□□□□□ -0.04
VCANP13611 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC14.83□□□□□ -0.04
VCANP13611 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VCANP13611 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC14.83□□□□□ -0.04
VCANP13611 RN7SL524P-201ENST00000581152 300 ntBASIC14.83□□□□□ -0.04
VCANP13611 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.83□□□□□ -0.04
VCANP13611 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VCANP13611 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
VCANP13611 LINC01101-201ENST00000622953 1884 ntBASIC14.83□□□□□ -0.04
VCANP13611 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
VCANP13611 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.82□□□□□ -0.04
VCANP13611 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.82□□□□□ -0.04
VCANP13611 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC14.82□□□□□ -0.04
VCANP13611 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.82□□□□□ -0.04
VCANP13611 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC14.82□□□□□ -0.04
VCANP13611 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC14.82□□□□□ -0.04
VCANP13611 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC14.82□□□□□ -0.04
VCANP13611 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC14.82□□□□□ -0.04
VCANP13611 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC14.82□□□□□ -0.04
VCANP13611 BX088702.1-201ENST00000610784 235 ntBASIC14.82□□□□□ -0.04
VCANP13611 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC14.82□□□□□ -0.04
VCANP13611 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
VCANP13611 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.82□□□□□ -0.04
VCANP13611 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
VCANP13611 OR52M2P-201ENST00000414298 959 ntBASIC14.82□□□□□ -0.04
VCANP13611 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC14.82□□□□□ -0.04
VCANP13611 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC14.82□□□□□ -0.04
VCANP13611 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.82□□□□□ -0.04
VCANP13611 PSAT1P2-201ENST00000426107 972 ntBASIC14.82□□□□□ -0.04
VCANP13611 RPL18AP15-201ENST00000430258 517 ntBASIC14.82□□□□□ -0.04
VCANP13611 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC14.82□□□□□ -0.04
VCANP13611 RN7SL375P-201ENST00000492442 298 ntBASIC14.82□□□□□ -0.04
VCANP13611 AL450346.2-201ENST00000495602 1024 ntBASIC14.82□□□□□ -0.04
VCANP13611 HINT1-205ENST00000508488 703 ntTSL 2 BASIC14.82□□□□□ -0.04
VCANP13611 RN7SL480P-201ENST00000581481 294 ntBASIC14.82□□□□□ -0.04
VCANP13611 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
VCANP13611 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.82□□□□□ -0.04
VCANP13611 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.82□□□□□ -0.04
VCANP13611 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.82□□□□□ -0.04
VCANP13611 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC14.82□□□□□ -0.04
VCANP13611 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 PPP1R2P10-201ENST00000393023 595 ntBASIC14.82□□□□□ -0.04
VCANP13611 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC14.82□□□□□ -0.04
VCANP13611 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC14.82□□□□□ -0.04
VCANP13611 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC14.82□□□□□ -0.04
VCANP13611 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.82□□□□□ -0.04
VCANP13611 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC14.82□□□□□ -0.04
VCANP13611 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 RN7SL277P-201ENST00000481521 288 ntBASIC14.82□□□□□ -0.04
VCANP13611 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
VCANP13611 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VCANP13611 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.82□□□□□ -0.04
VCANP13611 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VCANP13611 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
VCANP13611 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VCANP13611 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms