Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A2P12110 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
COL6A2P12110 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
COL6A2P12110 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
COL6A2P12110 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
COL6A2P12110 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
COL6A2P12110 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.65□□□□□ -0.06
COL6A2P12110 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A2P12110 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A2P12110 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 AC093214.1-201ENST00000511688 1107 ntBASIC14.65□□□□□ -0.06
COL6A2P12110 RNA5SP421-201ENST00000516864 134 ntBASIC14.65□□□□□ -0.06
COL6A2P12110 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.65□□□□□ -0.06
COL6A2P12110 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.65□□□□□ -0.06
COL6A2P12110 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.65□□□□□ -0.06
COL6A2P12110 AC138696.2-201ENST00000607376 223 ntBASIC14.65□□□□□ -0.06
COL6A2P12110 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.65□□□□□ -0.06
COL6A2P12110 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.65□□□□□ -0.06
COL6A2P12110 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A2P12110 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A2P12110 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
COL6A2P12110 AC139712.1-201ENST00000378256 1875 ntBASIC14.65□□□□□ -0.06
COL6A2P12110 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.65□□□□□ -0.06
COL6A2P12110 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A2P12110 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A2P12110 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.07
COL6A2P12110 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
COL6A2P12110 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
COL6A2P12110 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL6A2P12110 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.64□□□□□ -0.07
COL6A2P12110 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
COL6A2P12110 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.64□□□□□ -0.07
COL6A2P12110 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL6A2P12110 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.64□□□□□ -0.07
COL6A2P12110 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL6A2P12110 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.64□□□□□ -0.07
COL6A2P12110 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.64□□□□□ -0.07
COL6A2P12110 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 AC087499.6-201ENST00000411576 835 ntBASIC14.64□□□□□ -0.07
COL6A2P12110 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.64□□□□□ -0.07
COL6A2P12110 SPTLC1P1-201ENST00000447199 261 ntBASIC14.64□□□□□ -0.07
COL6A2P12110 MYCLP2-201ENST00000449268 967 ntBASIC14.64□□□□□ -0.07
COL6A2P12110 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 MESTP3-201ENST00000503460 968 ntBASIC14.64□□□□□ -0.07
COL6A2P12110 ALG3P1-201ENST00000508806 1114 ntBASIC14.64□□□□□ -0.07
COL6A2P12110 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.64□□□□□ -0.07
COL6A2P12110 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
COL6A2P12110 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.64□□□□□ -0.07
COL6A2P12110 AC004466.1-201ENST00000599515 1080 ntBASIC14.64□□□□□ -0.07
COL6A2P12110 KHSRPP1-201ENST00000427983 1768 ntBASIC14.64□□□□□ -0.07
COL6A2P12110 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.64□□□□□ -0.07
COL6A2P12110 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
COL6A2P12110 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.64□□□□□ -0.07
COL6A2P12110 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.64□□□□□ -0.07
COL6A2P12110 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
COL6A2P12110 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A2P12110 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.63□□□□□ -0.07
COL6A2P12110 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.63□□□□□ -0.07
COL6A2P12110 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
COL6A2P12110 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A2P12110 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms