Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.69
CSB-PGBD3P0DP91 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CSB-PGBD3P0DP91 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CSB-PGBD3P0DP91 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.39■□□□□ 0.69
CSB-PGBD3P0DP91 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.69
CSB-PGBD3P0DP91 AC136621.1-201ENST00000624017 2304 ntBASIC19.39■□□□□ 0.69
CSB-PGBD3P0DP91 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 AC084752.1-201ENST00000509766 622 ntBASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 DBP-202ENST00000593500 712 ntTSL 2 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 AC008894.3-201ENST00000624324 3103 ntBASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 AL590440.2-201ENST00000641973 1595 ntBASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CSB-PGBD3P0DP91 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 AC073869.2-201ENST00000417338 1026 ntBASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 PPOX-204ENST00000462866 473 ntTSL 5 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
CSB-PGBD3P0DP91 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 NSD1-211ENST00000511258 809 ntTSL 3 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 RNA5SP417-201ENST00000516459 108 ntBASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 ALG1L13P-202ENST00000519320 584 ntBASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 GSN-206ENST00000394353 2311 ntTSL 2 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 CICP23-201ENST00000605013 2741 ntBASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CSB-PGBD3P0DP91 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms