Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 ACTBP8-201ENST00000403258 1108 ntBASIC13.45□□□□□ -0.26
USB1Q9BQ65 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.45□□□□□ -0.26
USB1Q9BQ65 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.45□□□□□ -0.26
USB1Q9BQ65 TPTE2P1-204ENST00000435256 593 ntBASIC13.45□□□□□ -0.26
USB1Q9BQ65 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.45□□□□□ -0.26
USB1Q9BQ65 AC118282.1-201ENST00000506408 765 ntBASIC13.45□□□□□ -0.26
USB1Q9BQ65 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC13.45□□□□□ -0.26
USB1Q9BQ65 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.45□□□□□ -0.26
USB1Q9BQ65 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.45□□□□□ -0.26
USB1Q9BQ65 AL590396.2-201ENST00000636511 1041 ntBASIC13.45□□□□□ -0.26
USB1Q9BQ65 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
USB1Q9BQ65 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
USB1Q9BQ65 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
USB1Q9BQ65 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.45□□□□□ -0.26
USB1Q9BQ65 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 AC099521.3-201ENST00000624251 2938 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 AC093525.8-201ENST00000624099 1342 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 CICP17-201ENST00000418553 2377 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 SBF1P1-201ENST00000444527 5631 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 PRDM2-213ENST00000503842 705 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 RNA5SP412-201ENST00000516234 123 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 AC023310.1-201ENST00000554836 735 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 NAA38-206ENST00000576384 424 ntTSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 RN7SL48P-201ENST00000579283 293 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 AP001099.1-201ENST00000579385 855 ntTSL 5 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 AC090506.2-201ENST00000624521 419 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 AP000280.1-201ENST00000624800 832 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 RHOXF1P1-202ENST00000635473 501 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 AC020658.6-201ENST00000623564 1870 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
USB1Q9BQ65 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.44□□□□□ -0.26
USB1Q9BQ65 PDIA3P1-201ENST00000471856 1510 ntBASIC13.44□□□□□ -0.26
USB1Q9BQ65 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
USB1Q9BQ65 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
USB1Q9BQ65 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC13.43□□□□□ -0.26
USB1Q9BQ65 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
USB1Q9BQ65 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
USB1Q9BQ65 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
USB1Q9BQ65 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
USB1Q9BQ65 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms